Sequenced E. coli Genomes

EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although the pathogenic strains of E. coli are not the focus of EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or the projects are in progress. Use this table to track which genomes are available and where they are available from. Please add any strains you know are being sequenced or are finished.

Strain	Sequencing status	Accessions (if applicable)	In EcoliWiki	Comments
MG1655	complete	NC_000913	yes	PMID:9278503
W3110	complete	AC_000091	yes	PMID:16738553
DH10B	complete	NC_010473	not yet	PMID:18245285 This genome will be loaded as soon as possible - Nov 11, 2008
Escherichia coli (B) REL606	in progress		not yet	Will be included in EcoliWiki when made publically available. International E. coli B Consortium Entrez Genome Project
E. coli BL21 (DE3)	in progress		not yet	Will be included in EcoliWiki when publically available. DOE Joint Genome Institute Entrez Genome Project
E. coli BL21(DE3)	in progress		not yet	Will be included in EcoliWiki when publically available. Korea Research Institute of Bioscience and Biotechnology Entrez Genome Project
E. coli 101-1	in progress	Whole Genome Shotgun Sequence 101-1	no	E. coli 101-1 from JCVI Entrez Genome Project Enteroaggregative.
E. coli 53638	in progress	Whole Genome Shotgun Sequence 53638	no	53638 at JCVI Entrez Genome Project Enteroinvasive.
E. coli B171	in progress	Whole Genome Shotgun Sequence B171	no	B171 at JCVI Entrez Genome Project Enteropathogenic.
E. coli B7A	in progress	Whole Genome Shotgun Sequence B7A	no	B7A at JCVI Entrez Genome Project Enterotoxigenic.
E. coli E110019	in progress	Whole Genome Shotgun Sequence E110019	no	E110019 at JCVI Entrez Genome Project Atypical enteropathogenic.
E. coli E22	in progress	Whole Genome Shotgun Sequence E22	no	E22 at JCVI Entrez Genome Project Enteropathogenic.
E. coli E24377A	complete	NC_009801	no	E24377A at JCVI Entrez Genome Project Enterotoxigenic.
E. coli F11	in progress	{http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAJU00000000 Whole Genome Shotgun Sequence F11]	no	F11 at JCVI Entrez Genome Project Extra-intestinal pathogenic.
E. coli HS	complete	NC_009800	no	HS at JCVI Entrez Genome Project Human commensal isolate.
E. coli SMS-3-5	complete	NC_010498	no	PMID:18708504 SECEC SMS-3-5 at JCVI Entrez Genome Project Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.
E. coli O157:H7 EC4024	in progress	Whole Genome Shotgun Sequence EC4024	no	EC4024 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4042	in progress	Whole Genome Shotgun Sequence EC4042	no	EC4042 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4045	in progress	Whole Genome Shotgun Sequence EC4045	no	EC4045 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4076	in progress	Whole Genome Shotgun Sequence EC4076	no	EC4076 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4113	in progress	Whole Genome Shotgun Sequence EC4113	no	EC4113 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4115	complete	NC_011353	no	EC4115 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4196	in progress	Whole Genome Shotgun Sequence EC4196	no	EC4196 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4206	in progress	Whole Genome Shotgun Sequence EC4206	no	EC4206 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4401	in progress	Whole Genome Shotgun Sequence EC4401	no	EC4401 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4486	in progress	Whole Genome Shotgun Sequence EC4486	no	EC4486 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC4501	in progress	Whole Genome Shotgun Sequence EC4501	no	EC4501 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC508	in progress	Whole Genome Shotgun Sequence EC508	no	EC508 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 TW14359	in progress		no	Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 EC869	in progress	Whole Genome Shotgun Sequence EC869	no	EC869 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 FRIK966	in progress		no	MBRI Entrez Genome Project Bovine isolate; does not express Shiga toxin.
E. coli O157:H7 TW14588	in progress	Whole Genome Shotgun Sequence TW14588	no	TW14588 at JCVI Entrez Genome Project Enterohemorrhagic.
E. coli O157:H7 GZ-021210/cattle	in progress		no	Entrez Genome Project Enterohemorrhagic bovine isolate.
E. coli O157:H7	complete	NC_002695	no	PMID:11258796 Entrez Genome Project
E. coli APEC O1	complete	NC_008563	no	PMID:17293413 Nolan Lab Bacterial Pathogenesis Laboratory Entrez Genome Project
E. coli UTI89	complete	NC_007946	no	PMID:16585510 Entrez Genome Project
E. coli 042	in progress		no	Sanger Institute Entrez Genome Project Enteroaggregative.
E. coli 536	complete	NC_008253	no	PMID:16879640 University of Gottingen Entrez Genome Project Uropathogenic.
E. coli ATCC 8739	complete	NC_010468	not yet	E. coli B strain Joint Genome Institute Entrez Genome Project
E. coli RS218	in progress		no	PMID:16988236 University of Wisconsin Genome Center Entrez Genome Project E. coli K1; Neonatal meningitis E. coli (NMEC).
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