ydeH:Gene Product(s): Difference between revisions

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!{{table heading style}} |Standard name
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YdeH product  
YdeH product  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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conserved protein product<ref name='LIB:Riley_2006'/>, B1535 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeG product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
conserved protein product<ref name='LIB:Riley_2006'/>, B1535 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeG product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG11643-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG11643-MONOMER at EcoCyc]  
<pre>MIKKTTEIDA ILLNLNKAID AHYQWLVSMF HSVVARDASK PEITDNHSYG LCQFGRWIDH
<pre>MIKKTTEIDA ILLNLNKAID AHYQWLVSMF HSVVARDASK PEITDNHSYG LCQFGRWIDH
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SEGHINITVT AGVSRAFPEE PLDVVIGRAD RAMYEGKQTG RNRCMFIDEQ NVINRV</pre>  
SEGHINITVT AGVSRAFPEE PLDVVIGRAD RAMYEGKQTG RNRCMFIDEQ NVINRV</pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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33.86 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
33.86 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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39880 - 40505 (calc based on 12 Y, 4 W, and 5 C residues)  
39880 - 40505 (calc based on 12 Y, 4 W, and 5 C residues)  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11643-MONOMER EcoCyc:EG11643-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11643-MONOMER EcoCyc:EG11643-MONOMER]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
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[[uniprot:P31129|UniProt:P31129]]
[[uniprot:P31129|UniProt:P31129]]
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://pfam.sanger.ac.uk/family?acc=PF00990 PFAM:PF00990]
[http://pfam.sanger.ac.uk/family?acc=PF00990 PFAM:PF00990]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416052 RefSeq:NP_416052]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416052 RefSeq:NP_416052]
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:Proteins]]

Revision as of 00:49, 5 November 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YdeH product

Synonyms

conserved protein product[1], B1535 product[2][1], YdeG product[2][1], YdeH product[2][1]

Product description

conserved protein[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MIKKTTEIDA ILLNLNKAID AHYQWLVSMF HSVVARDASK PEITDNHSYG LCQFGRWIDH
LGPLDNDELP YVRLMDSAHQ HMHNCGRELM LAIVENHWQD AHFDAFQEGL LSFTAALTDY
KIYLLTIRSN MDVLTGLPGR RVLDESFDHQ LRNAEPLNLY LMLLDIDRFK LVNDTYGHLI
GDVVLRTLAT YLASWTRDYE TVYRYGGEEF IIIVKAANDE EACRAGVRIC QLVDNHAITH
SEGHINITVT AGVSRAFPEE PLDVVIGRAD RAMYEGKQTG RNRCMFIDEQ NVINRV
Mol. Wt

33.86 kDa (calc) [2]

pI
Extinction coefficient

39880 - 40505 (calc based on 12 Y, 4 W, and 5 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes

Domain

157 - 289

GGDEF

UniProt:P31129

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Structure

Structures

<beststructure>ydeH 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11643-MONOMER

UniProt (EcoliWiki Page)

UniProt:P31129

PFAM (EcoliWiki Page)

PFAM:PF00990

RefSeq (EcoliWiki Page)

RefSeq:NP_416052


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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