yaiY:Gene Product(s): Difference between revisions

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!{{table heading style}} |Standard name
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YaiY product  
YaiY product  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted inner membrane protein product<ref name='LIB:Riley_2006'/>, YaiY product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0379 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted inner membrane protein product<ref name='LIB:Riley_2006'/>, YaiY product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0379 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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inner membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
inner membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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|- {{table_heading_style}}
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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[[Category:GO:0016020_!_membrane]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016020_!_membrane GO:0016020]
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membrane
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0397
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C
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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[[Category:GO:0016020_!_membrane]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016020_!_membrane GO:0016020]
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membrane
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0472
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C
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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[[Category:GO:0016021_!_integral_to_membrane]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016021_!_integral_to_membrane GO:0016021]
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integral_to_membrane
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0812
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C
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6228-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6228-MONOMER at EcoCyc]  
<pre>MADFTLSKSL FSGKYRNASS TPGNIAYALF VLFCFWAGAQ LLNLLVHAPG VYERLMQVQE
<pre>MADFTLSKSL FSGKYRNASS TPGNIAYALF VLFCFWAGAQ LLNLLVHAPG VYERLMQVQE
TGRPRVEIGL GVGTIFGLIP FLVGCLIFAV VALWLHWRHR RQ</pre>  
TGRPRVEIGL GVGTIFGLIP FLVGCLIFAV VALWLHWRHR RQ</pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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11.42 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
11.42 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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20970 - 21220 (calc based on 3 Y, 3 W, and 2 C residues)  
20970 - 21220 (calc based on 3 Y, 3 W, and 2 C residues)  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6228-MONOMER EcoCyc:G6228-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6228-MONOMER EcoCyc:G6228-MONOMER]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
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[[uniprot:P0AAP7|UniProt:P0AAP7]]
[[uniprot:P0AAP7|UniProt:P0AAP7]]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414913 RefSeq:NP_414913]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414913 RefSeq:NP_414913]
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:Proteins]]

Revision as of 00:38, 5 November 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YaiY product

Synonyms

predicted inner membrane protein product[1], YaiY product[2][1], B0379 product[2][1]

Product description

inner membrane protein[2][3]

EC number (for enzymes)
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes

plasma membrane

C-terminus localized in the cytoplasm with 2 predicted transmembrane domains

Daley et al. (2005) [4]


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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MADFTLSKSL FSGKYRNASS TPGNIAYALF VLFCFWAGAQ LLNLLVHAPG VYERLMQVQE
TGRPRVEIGL GVGTIFGLIP FLVGCLIFAV VALWLHWRHR RQ
Mol. Wt

11.42 kDa (calc) [2]

pI
Extinction coefficient

20970 - 21220 (calc based on 3 Y, 3 W, and 2 C residues)

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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes

Domain

25 - 47

Predicted membrane-spanning helix.

TMD predicted by TMHMM[5]

Domain

68 - 90

Predicted membrane-spanning helix.

TMD predicted by TMHMM[5]

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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

tmhmm.php?gene=yaiY&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure

Structures

<beststructure>yaiY 562</beststructure>

Models

View models at:

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6228-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AAP7

RefSeq (EcoliWiki Page)

RefSeq:NP_414913


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  5. ↑ 5.0 5.1 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed


Categories

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