oxc:Gene Product(s): Difference between revisions

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!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
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Oxc product  
Oxc product  
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!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted oxalyl-CoA decarboxylase product<ref name='LIB:Riley_2006'/>, B2373 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfdU product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Oxc product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted oxalyl-CoA decarboxylase product<ref name='LIB:Riley_2006'/>, B2373 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfdU product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Oxc product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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predicted oxalyl-CoA decarboxylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted oxalyl-CoA decarboxylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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magnesium ion binding
magnesium ion binding
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GO_REF:0000002
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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InterPro:IPR012000
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR012000 InterPro:IPR012000]
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F
F
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catalytic activity
catalytic activity
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GO_REF:0000002
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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InterPro:IPR011766
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR011766 InterPro:IPR011766]
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F
F
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oxalyl-CoA decarboxylase activity
oxalyl-CoA decarboxylase activity
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GO_REF:0000003
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000003 GO_REF:0000003]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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lyase activity
lyase activity
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GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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SP_KW:KW-0456
[http://www.uniprot.org/keywords/KW-0456 SP_KW:KW-0456]
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F
F
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carboxy-lyase activity
carboxy-lyase activity
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GO_REF:0000004
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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SP_KW:KW-0210
[http://www.uniprot.org/keywords/KW-0210 SP_KW:KW-0210]
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F
F
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thiamin pyrophosphate binding
thiamin pyrophosphate binding
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GO_REF:0000002
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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InterPro:IPR011766
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR011766 InterPro:IPR011766]
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F
F
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thiamin pyrophosphate binding
thiamin pyrophosphate binding
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GO_REF:0000002
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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InterPro:IPR012000
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR012000 InterPro:IPR012000]
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F
F
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thiamin pyrophosphate binding
thiamin pyrophosphate binding
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GO_REF:0000002
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
|
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
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InterPro:IPR012001
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR012001 InterPro:IPR012001]
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F
F
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G7236-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G7236-MONOMER at EcoCyc]  
<pre>MSDQLQMTDG MHIIVEALKQ NNIDTIYGVV GIPVTDMARH AQAEGIRYIG FRHEQSAGYA
<pre>MSDQLQMTDG MHIIVEALKQ NNIDTIYGVV GIPVTDMARH AQAEGIRYIG FRHEQSAGYA
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VIDPAAGTES GHITKLNPKQ VAGN</pre>  
VIDPAAGTES GHITKLNPKQ VAGN</pre>  
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!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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60.58 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
60.58 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
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!{{table heading style}} |pI
!align=left {{table heading style}} |pI
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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44350 - 44850 (calc based on 15 Y, 4 W, and 4 C residues)  
44350 - 44850 (calc based on 15 Y, 4 W, and 4 C residues)  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7236-MONOMER EcoCyc:G7236-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7236-MONOMER EcoCyc:G7236-MONOMER]
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|-
|-  
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[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])  
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])  
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[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0AFI0 SwissModel:P0AFI0]
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0AFI0 SwissModel:P0AFI0]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
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[[uniprot:P0AFI0|UniProt:P0AFI0]]
[[uniprot:P0AFI0|UniProt:P0AFI0]]
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://pfam.sanger.ac.uk/family?acc=PF02776 PFAM:PF02776]
[http://pfam.sanger.ac.uk/family?acc=PF02776 PFAM:PF02776]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416874 RefSeq:NP_416874]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416874 RefSeq:NP_416874]
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[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
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[http://salilab.org/modbase/searchbyid?databaseID=P0AFI0 ModBase:P0AFI0]
[http://salilab.org/modbase/searchbyid?databaseID=P0AFI0 ModBase:P0AFI0]
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:Proteins]]

Revision as of 00:25, 5 November 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

Oxc product

Synonyms

predicted oxalyl-CoA decarboxylase product[1], B2373 product[2][1], YfdU product[2][1], Oxc product[2][1]

Product description

predicted oxalyl-CoA decarboxylase[2][3]

EC number (for enzymes)
edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0000287

magnesium ion binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012000

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011766

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0008949

oxalyl-CoA decarboxylase activity

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.1.1.8

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016829

lyase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016831

carboxy-lyase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0210

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0030976

thiamin pyrophosphate binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011766

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0030976

thiamin pyrophosphate binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012000

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0030976

thiamin pyrophosphate binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012001

F

Seeded from EcoCyc 12.5 [4]

complete

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Interactions

Partner Type Partner Notes
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

[back to top]


Physical Properties

Sequence

at EcoCyc 

MSDQLQMTDG MHIIVEALKQ NNIDTIYGVV GIPVTDMARH AQAEGIRYIG FRHEQSAGYA
AAASGFLTQK PGICLTVSAP GFLNGLTALA NATVNGFPMI MISGSSDRAI VDLQQGDYEE
LDQMNAAKPY AKAAFRVNQP QDLGIALARA IRVSVSGRPG GVYLDLPANV LAATMEKDEA
LTTIVKVENP SPALLPCPKS VTSAISLLAK AERPLIILGK GAAYSQADEQ LREFIESAQI
PFLPMSMAKG ILEDTHPLSA AAARSFALAN ADVVMLVGAR LNWLLAHGKK GWAADTQFIQ
LDIEPQEIDS NRPIAVPVVG DIASSMQGML AELKQNTFTT PLVWRDILNI HKQQNAQKMH
EKLSTDTQPL NYFNALSAVR DVLRENQDIY LVNEGANTLD NARNIIDMYK PRRRLDCGTW
GVMGIGMGYA IGASVTSGSP VVAIEGDSAF GFSGMEIETI CRYNLPVTIV IFNNGGIYRG
DGVDLSGAGA PSPTDLLHHA RYDKLMDAFR GVGYNVTTTD ELRHALTTGI QSRKPTIINV
VIDPAAGTES GHITKLNPKQ VAGN
Mol. Wt

60.58 kDa (calc) [2]

pI
Extinction coefficient

44350 - 44850 (calc based on 15 Y, 4 W, and 4 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structures

<beststructure>oxc 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7236-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0AFI0

UniProt (EcoliWiki Page)

UniProt:P0AFI0

PFAM (EcoliWiki Page)

PFAM:PF02776

RefSeq (EcoliWiki Page)

RefSeq:NP_416874

ModBase (EcoliWiki Page)

ModBase:P0AFI0


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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