ebgA:Gene Product(s): Difference between revisions

Standard name	EbgA product
Synonyms	cryptic beta-D-galactosidase, alpha subunit product^[1], B3076 product^[2]^[1], EbgA product^[2]^[1]
Product description	evolved β-D-galactosidase, α subunit; cryptic gene^[2]^[3]; Component of ; evolved β-D-galactosidase^[3]
EC number (for enzymes)	3.2.1.23^[1]
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003824	catalytic activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011013	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0003824	catalytic activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013781	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0003824	catalytic activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR014718	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006101	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006102	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006103	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006104	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013812	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0004565	beta-galactosidase activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004199	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0004565	beta-galactosidase activity	GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:3.2.1.23	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005975	carbohydrate metabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004199	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005975	carbohydrate metabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006101	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005975	carbohydrate metabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006102	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005975	carbohydrate metabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006103	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0016052	carbohydrate catabolic process				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0005975	carbohydrate metabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006104	P	Seeded from EcoCyc 12.5 ^[4]	complete
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Interactions

Partner Type	Partner	Notes
Protein	Subunits of evolved β-D-galactosidase	could be indirect
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MNRWENIQLT HENRLAPRAY FFSYDSVAQA RTFARETSSL FLPLSGQWNF HFFDHPLQVP EAFTSELMAD WGHITVPAMW QMEGHGKLQY TDEGFPFPID VPFVPSDNPT GAYQRIFTLS DGWQGKQTLI KFDGVETYFE VYVNGQYVGF SKGSRLTAEF DISAMVKTGD NLLCVRVMQW ADSTYVEDQD MWWSAGIFRD VYLVGKHLTH INDFTVRTDF DEAYCDATLS CEVVLENLAA SPVVTTLEYT LFDGERVVHS SAIDHLAIEK LTSASFAFTV EQPQQWSAES PYLYHLVMTL KDANGNVLEV VPQRVGFRDI KVRDGLFWIN NRYVMLHGVN RHDNDHRKGR AVGMDRVEKD LQLMKQHNIN SVRTAHYPND PRFYELCDIY GLFVMAETDV ESHGFANVGD ISRITDDPQW EKVYVERIVR HIHAQKNHPS IIIWSLGNES GYGCNIRAMY HAAKALDDTR LVHYEEDRDA EVVDIISTMY TRVPLMNEFG EYPHPKPRII CEYAHAMGNG PGGLTEYQNV FYKHDCIQGH YVWEWCDHGI QAQDDHGNVW YKFGGDYGDY PNNYNFCLDG LIYSDQTPGP GLKEYKQVIA PVKIHARDLT RGELKVENKL WFTTLDDYTL HAEVRAEGET LATQQIKLRD VAPNSEAPLQ ITLPQLDARE AFLNITVTKD SRTRYSEAGH PIATYQFPLK ENTAQPVPFA PNNARPLTLE DDRLSCTVRG YNFAITFSKM SGKPTSWQVN GESLLTREPK INFFKPMIDN HKQEYEGLWQ PNHLQIMQEH LRDFAVEQSD GEVLIISRTV IAPPVFDFGM RCTYIWRIAA DGQVNVALSG ERYGDYPHII PCIGFTMGIN GEYDQVAYYG RGPGENYADS QQANIIDIWR STVDAMFENY PFPQNNGNRQ HVRWTALTNR HGNGLLVVPQ RPINFSAWHY TQENIHAAQH CNELQRSDDI TLNLDHQLLG LGSNSWGSEV LDSWRVWFRD FSYGFTLLPV SGGEATAQSL ASYEFGAGFF STNLHSENKQ
Mol. Wt	117.88 kDa (calc) ^[2]
pI
Extinction coefficient	210510 - 212135 (calc based on 49 Y, 25 W, and 13 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG10252-MONOMER
UniProt (EcoliWiki Page)	UniProt:P06864
PFAM (EcoliWiki Page)	PFAM:PF02837
RefSeq (EcoliWiki Page)	RefSeq:YP_026199
ModBase (EcoliWiki Page)	ModBase:P06864
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.00 ^4.01 ^4.02 ^4.03 ^4.04 ^4.05 ^4.06 ^4.07 ^4.08 ^4.09 ^4.10 ^4.11 ^4.12 ^4.13 ^4.14 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

ebgA:Gene Product(s): Difference between revisions

Revision as of 20:26, 2 October 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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 InterPro:IPR006102
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+P
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+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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+complete
+|-
+|
+|
+[[Category:GO:0005975_!_carbohydrate_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005975_!_carbohydrate_metabolic_process GO:0005975]
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+carbohydrate metabolic process
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+GO_REF:0000002
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+IEA: Inferred from Electronic Annotation
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+InterPro:IPR006103
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 P
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 IEA: Inferred from Electronic Annotation
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-InterPro:IPR006103
+InterPro:IPR006104
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 P

ebgA:Gene Product(s): Difference between revisions

Revision as of 20:26, 2 October 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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