agaW:Gene Product(s): Difference between revisions
Data loaded by TableEdit_Loader. |
Data loaded by TableEdit_Loader. |
||
| Line 90: | Line 90: | ||
| | | | ||
F | F | ||
| | |||
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | |||
| | |||
complete | |||
|- | |||
| | |||
| | |||
[[Category:GO:0006810_!_transport]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006810_!_transport GO:0006810] | |||
| | |||
transport | |||
| | |||
GO_REF:0000004 | |||
| | |||
IEA: Inferred from Electronic Annotation | |||
| | |||
SP_KW:KW-0813 | |||
| | |||
P | |||
| | | | ||
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | ||
| Line 117: | Line 136: | ||
| | | | ||
[[Category:GO: | [[Category:GO:0008643_!_carbohydrate_transport]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008643_!_carbohydrate_transport GO:0008643] | ||
| | | | ||
transport | carbohydrate transport | ||
| | | | ||
GO_REF:0000004 | GO_REF:0000004 | ||
| Line 125: | Line 144: | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
SP_KW:KW- | SP_KW:KW-0762 | ||
| | | | ||
P | P | ||
Revision as of 18:50, 2 October 2008
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
AgaW product |
|---|---|
| Synonyms | |
| Product description |
PTS system N-acetylgalactosameine-specific IIC component 2[1][2] |
| EC number (for enzymes) |
|
| edit table | |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005351 |
sugar:hydrogen symporter activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [3] |
complete | |||
| GO:0006810 |
transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [3] |
complete | |||
| GO:0046349 |
amino sugar biosynthetic process |
P |
Seeded from EcoCyc 11.1[2]. |
required fields missing | ||||
| GO:0008643 |
carbohydrate transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [3] |
complete | |||
| edit table |
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Interactions
| Partner Type | Partner | Notes |
|---|---|---|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
|
plasma membrane |
C-terminus localized in the cytoplasm with 3 predicted transmembrane domains |
Daley et al. (2005) [4] |
|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MEISLLQAFA LGIIAFIAGL DMFNGLTHMH RPVVLGPLVG LVLGDLHTGI LTGGTLELVW MGLAPLAGAQ PPNVIIGTIV GTAFAITTGV KPDVAVGVAV PFAVAVQMGI TFLFSVMSGV MSRCDLATNP RRI |
|---|---|
| Mol. Wt |
13.72 kDa (calc) [1] |
| pI | |
| Extinction coefficient |
5500 - 5625 (calc based on 0 Y, 1 W, and 1 C residues) |
| edit table | |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structure Type | Organism | Accession | Residues covered | Notes |
|---|---|---|---|---|
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
Categories