ycaM:Gene Product(s): Difference between revisions

Standard name	YcaM product
Synonyms	predicted transporter product^[1], B0899 product^[2]^[1], YcaM product^[2]^[1]
Product description	YcaM predicted APC amino acid transporter^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0006810	transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0813	P	Seeded from EcoCyc 12.5 ^[4]
	GO:0006865	amino_acid_transport	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002293	P	Seeded from EcoCyc 12.5 ^[4]
	GO:0006810	transport	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004841	P	Seeded from EcoCyc 12.5 ^[4]
	GO:0015292	uniporter activity				F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0015171	amino_acid_transporter_activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002293	F	Seeded from EcoCyc 12.5 ^[4]
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MNLLFHTLLF CFFYLTCFIP NFIRLKIKCA AGYNFAFRYF RTSYLPRIIP RFTDAPLILA KDLSMAGNVQ EKQLRWYNIA LMSFITVWGF GNVVNNYANQ GLVVVFSWVF IFALYFTPYA LIVGQLGSTF KDGKGGVSTW IKHTMGPGLA YLAAWTYWVV HIPYLAQKPQ AILIALGWAM KGDGSLIKEY SVVALQGLTL VLFIFFMWVA SRGMKSLKIV GSVAGIAMFV MSLLYVAMAV TAPAITEVHI ATTNITWETF IPHIDFTYIT TISMLVFAVG GAEKISPYVN QTRNPGKEFP KGMLCLAVMV AVCAILGSLA MGMMFDSRNI PDDLMTNGQY YAFQKLGEYY NMGNTLMVIY AIANTLGQVA ALVFSIDAPL KVLLGDADSK YIPASLCRTN ASGTPVNGYF LTLVLVAILI MLPTLGIGDM NNLYKWLLNL NSVVMPLRYL WVFVAFIAVV RLAQKYKPEY VFIRNKPLAM TVGIWCFAFT AFACLTGIFP KMEAFTAEWT FQLALNVATP FVLVGLGLIF PLLARKANSK
Mol. Wt	52.5 kDa (calc) ^[2]
pI
Extinction coefficient	110240 - 111240 (calc based on 26 Y, 13 W, and 8 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:YCAM
UniProt (EcoliWiki Page)	UniProt:P75835
PFAM (EcoliWiki Page)	PFAM:PF00324
RefSeq (EcoliWiki Page)	RefSeq:NP_415419
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 ^4.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

@@ Line 88: / Line 88: @@
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 SP_KW:KW-0813
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+P
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+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+|
+|-
+|
+|
+[[Category:GO:0006865_!_amino_acid_transport]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006865_!_amino_acid_transport GO:0006865]
+|
+amino_acid_transport
+|
+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR002293
 |
 P
@@ Line 136: / Line 155: @@
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-[[Category:GO:0006865_!_amino_acid_transport]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006865_!_amino_acid_transport GO:0006865]
+[[Category:GO:0015171_!_amino_acid_transmembrane_transporter_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0015171_!_amino_acid_transmembrane_transporter_activity GO:0015171]
 |
-amino_acid_transport
+amino_acid_transporter_activity
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 [http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
@@ Line 146: / Line 165: @@
 InterPro:IPR002293
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-P
+F
 |
 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>

ycaM:Gene Product(s): Difference between revisions

Revision as of 07:19, 30 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

ycaM:Gene Product(s): Difference between revisions

Revision as of 07:19, 30 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search