rffG:Gene Product(s): Difference between revisions

Standard name	RffG product
Synonyms	dTDP-glucose 4,6-dehydratase product^[1], B3788 product^[2]^[1], Rff product^[2]^[1], NfrC product^[2]^[1], RffG product^[2]^[1]
Product description	dTDP-glucose 4,6-dehydratase 2^[2]^[3]
EC number (for enzymes)	4.2.1.46^[1]
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003824	catalytic_activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001509	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0008460	dTDP-glucose_4,6-dehydratase_activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005888	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0009243	O antigen biosynthetic process				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0009246	enterobacterial common antigen biosynthetic process				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0009435	NAD biosynthetic process				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0042280	cell surface antigen activity, host-interacting				F	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0008460	dTDP-glucose_4,6-dehydratase_activity	GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:4.2.1.46	F	Seeded from EcoCyc 12.5 ^[4]
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MRKILITGGA GFIGSALVRY IINETSDAVV VVDKLTYAGN LMSLAPVAQS ERFAFEKVDI CDRAELARVF TEHQPDCVMH LAAESHVDRS IDGPAAFIET NIVGTYTLLE AARAYWNALT EDKKSAFRFH HISTDEVYGD LHSTDDFFTE TTPYAPSSPY SASKASSDHL VRAWLRTYGL PTLITNCSNN YGPYHFPEKL IPLMILNALA GKSLPVYGNG QQIRDWLYVE DHARALYCVA TTGKVGETYN IGGHNERKNL DVVETICELL EELAPNKPHG VAHYRDLITF VADRPGHDLR YAIDASKIAR ELGWLPQETF ESGMRKTVQW YLANESWWKQ VQDGSYQGER LGLKG
Mol. Wt	39.75 kDa (calc) ^[2]
pI
Extinction coefficient	65320 - 65945 (calc based on 18 Y, 7 W, and 5 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:DTDPGLUCDEHYDRAT2-MONOMER
UniProt (EcoliWiki Page)	UniProt:P27830
PFAM (EcoliWiki Page)	PFAM:PF01370
RefSeq (EcoliWiki Page)	RefSeq:YP_026255
ModBase (EcoliWiki Page)	ModBase:P27830
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

rffG:Gene Product(s): Difference between revisions

Revision as of 05:01, 30 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 88: / Line 88: @@
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 InterPro:IPR001509
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+F
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+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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+|-
+|
+|
+[[Category:GO:0008460_!_dTDP-glucose_4,6-dehydratase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008460_!_dTDP-glucose_4,6-dehydratase_activity GO:0008460]
+|
+dTDP-glucose_4,6-dehydratase_activity
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+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
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+IEA: Inferred from Electronic Annotation
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+InterPro:IPR005888
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 F
@@ Line 197: / Line 216: @@
 dTDP-glucose_4,6-dehydratase_activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000003 GO_REF:0000003]<br />
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR005888
+EC:4.2.1.46
 |
 F

rffG:Gene Product(s): Difference between revisions

Revision as of 05:01, 30 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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