dsdC:Gene Product(s): Difference between revisions

Standard name	DsdC product
Synonyms	DNA-binding transcriptional dual regulator product^[1], B2364 product^[2]^[1], DsdC product^[2]^[1], D-serine dehydratase (deaminase) transcriptional activator product^[2]^[1]
Product description	DsdC transcriptional dual regulator^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003700	transcription_factor_activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000847	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0003677	DNA_binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0238	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0009063	amino acid catabolic process				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0005737	cytoplasm				C	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016563	transcription activator activity				F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006350	transcription	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P	Seeded from EcoCyc 12.5 ^[4]
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MEPLREIRNR LLNGWQLSKM HTFEVAARHQ SFALAAEELS LSPSAVSHRI NQLEEELGIQ LFVRSHRKVE LTHEGKRVYW ALKSSLDTLN QEILDIKNQE LSGTLTLYSR PSIAQCWLVP ALGDFTRRYP SISLTVLTGN DNVNLQRAGI DLAIYFDDAP SAQLTHHFLM DEEILPVCSP EYAQRHALTN TVINLCHCTL LHDRQAWSND SGTDEWHSWA QHYAVNLPTS SGIGFDRSDL AVIAAMNHIG VAMGRKRLVQ KRLASGELVA PFGDMTVKCH QHYYITTLPG RQWPKIEAFI IWLREQVKTT S
Mol. Wt	35.33 kDa (calc) ^[2]
pI	6.88^[2]
Extinction coefficient	55920 - 56545 (calc based on 8 Y, 8 W, and 5 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:PD00297
UniProt (EcoliWiki Page)	UniProt:P46068
PFAM (EcoliWiki Page)	PFAM:PF00126
RefSeq (EcoliWiki Page)	RefSeq:NP_416865
ModBase (EcoliWiki Page)	ModBase:P46068
ECOO157CYC (EcoliWiki Page)	ECOO157CYC:Z0885-MONOMER
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

@@ Line 79: / Line 79: @@
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-[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
+[[Category:GO:0003700_!_transcription_factor_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003700_!_transcription_factor_activity GO:0003700]
 |
-DNA_binding
+transcription_factor_activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0238
+InterPro:IPR000847
 |
 F
@@ Line 96: / Line 96: @@
 |-
 |
 |
-[[Category:GO:0009063_!_amino_acid_catabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009063_!_amino_acid_catabolic_process GO:0009063]
+[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
 |
-amino acid catabolic process
+DNA_binding
 |
+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
 |
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0238
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-P
+F
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
-required fields missing
 |-
 |
 |
-[[Category:GO:0006350_!_transcription]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006350_!_transcription GO:0006350]
+[[Category:GO:0009063_!_amino_acid_catabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009063_!_amino_acid_catabolic_process GO:0009063]
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-transcription
+amino acid catabolic process
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@@ Line 174: / Line 174: @@
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-[[Category:GO:0003700_!_transcription_factor_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003700_!_transcription_factor_activity GO:0003700]
+[[Category:GO:0006350_!_transcription]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006350_!_transcription GO:0006350]
 |
-transcription_factor_activity
+transcription
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000847
+SP_KW:KW-0804
 |
-F
+P
 |
 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>

dsdC:Gene Product(s): Difference between revisions

Revision as of 23:58, 29 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

dsdC:Gene Product(s): Difference between revisions

Revision as of 23:58, 29 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search