dinF:Gene Product(s): Difference between revisions

Standard name	DinF product
Synonyms	DNA-damage-inducible SOS response protein product^[1], DNA-damage-inducible protein F product^[2]^[1], DinF product^[2]^[1], B4044 product^[2]^[1]
Product description	DinF MATE Transporter^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0006855	multidrug_transport	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002528	P	Seeded from EcoCyc 12.5 ^[4]
	GO:0015238	drug_transporter_activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002528	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0006281	DNA repair				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0015292	uniporter activity				F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0009432	SOS response				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0015297	antiporter_activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002528	F	Seeded from EcoCyc 12.5 ^[4]
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MPPGVAVCFS SLFIRLVCMA FLTSSDKALW HLALPMIFSN ITVPLLGLVD TAVIGHLDSP VYLGGVAVGA TATSFLFMLL LFLRMSTTGL TAQAYGAKNP QALARTLVQP LLLALGAGAL IALLRTPIID LALHIVGGSE AVLEQARRFL EIRWLSAPAS LANLVLLGWL LGVQYARAPV ILLVVGNILN IVLDVWLVMG LHMNVQGAAL ATVIAEYATL LIGLLMVRKI LKLRGISGEM LKTAWRGNFR RLLALNRDIM LRSLLLQLCF GAITVLGARL GSDIIAVNAV LMTLLTFTAY ALDGFAYAVE AHSGQAYGAR DGSQLLDVWR AACRQSGIVA LLFSVVYLLA GEHIIALLTS LTQIQQLADR YLIWQVILPV VGVWCYLLDG MFIGATRATE MRNSMAVAAA GFALTLLTLP WLGNHALWLA LTVFLALRGL SLAAIWRRHW RNGTWFAAT
Mol. Wt	49.65 kDa (calc) ^[2]
pI
Extinction coefficient	86400 - 87025 (calc based on 10 Y, 13 W, and 5 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:DINF-MONOMER
UniProt (EcoliWiki Page)	UniProt:P28303
PFAM (EcoliWiki Page)	PFAM:PF01554
RefSeq (EcoliWiki Page)	RefSeq:NP_418468
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

@@ Line 90: / Line 90: @@
 |
 P
+|
+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+|
+|-
+|
+|
+[[Category:GO:0015238_!_drug_transporter_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0015238_!_drug_transporter_activity GO:0015238]
+|
+drug_transporter_activity
+|
+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR002528
+|
+F
 |
 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
@@ Line 155: / Line 174: @@
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-[[Category:GO:0015238_!_drug_transporter_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0015238_!_drug_transporter_activity GO:0015238]
+[[Category:GO:0015297_!_antiporter_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0015297_!_antiporter_activity GO:0015297]
 |
-drug_transporter_activity
+antiporter_activity
 |
 [http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />

dinF:Gene Product(s): Difference between revisions

Revision as of 23:45, 29 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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dinF:Gene Product(s): Difference between revisions

Revision as of 23:45, 29 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search