agaW:Gene Product(s): Difference between revisions

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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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[[Category:GO:0008643_!_carbohydrate_transport]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008643_!_carbohydrate_transport GO:0008643]
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carbohydrate_transport
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0762
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P
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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[[Category:GO:0008643_!_carbohydrate_transport]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008643_!_carbohydrate_transport GO:0008643]
[[Category:GO:0009401_!_phosphoenolpyruvate-dependent_sugar_phosphotransferase_system]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009401_!_phosphoenolpyruvate-dependent_sugar_phosphotransferase_system GO:0009401]
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carbohydrate_transport
phosphoenolpyruvate-dependent_sugar_phosphotransferase_system
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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SP_KW:KW-0762
InterPro:IPR004700
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P
P

Revision as of 22:09, 29 September 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

AgaW product

Synonyms

B3134 product[1], YhaZ product[1], AgaW product[1]

Product description

PTS system N-acetylgalactosameine-specific IIC component 2[1][2]

EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0008643

carbohydrate_transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0762

P

Seeded from EcoCyc 12.5 [3]

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc 12.5 [3]

GO:0005351

sugar_porter_activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0762

F

Seeded from EcoCyc 12.5 [3]

GO:0046349

amino sugar biosynthetic process

P

Seeded from EcoCyc 11.1[2].

required fields missing

GO:0009401

phosphoenolpyruvate-dependent_sugar_phosphotransferase_system

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004700

P

Seeded from EcoCyc 12.5 [3]


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Interactions

Partner Type Partner Notes
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Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MEISLLQAFA LGIIAFIAGL DMFNGLTHMH RPVVLGPLVG LVLGDLHTGI LTGGTLELVW
MGLAPLAGAQ PPNVIIGTIV GTAFAITTGV KPDVAVGVAV PFAVAVQMGI TFLFSVMSGV
MSRCDLATNP RRI
Mol. Wt

13.72 kDa (calc) [1]

pI
Extinction coefficient

5500 - 5625 (calc based on 0 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes
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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

UniProt (EcoliWiki Page)

UniProt:P42905

PFAM (EcoliWiki Page)

PFAM:PF03609

RefSeq (EcoliWiki Page)

RefSeq:NP_417603

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z4486-MONOMER

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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