cbl:Gene Product(s): Difference between revisions

Standard name	Cbl product
Synonyms	DNA-binding transcriptional activator of cysteine biosynthesis product^[1], B1987 product^[2]^[1], Cbl product^[2]^[1]
Product description	Cbl transcriptional activator^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	Aspect	Notes	Status
	GO:0006790	sulfur metabolic process			P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006350	transcription	PMID:10506196^[4]	IDA: Inferred from Direct Assay	P	Seeded from EcoCyc 11.1^[3].	complete
	GO:0019344	cysteine biosynthetic process			P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016564	transcription repressor activity			F	Seeded from EcoCyc 10.6^[2].	required fields missing
	GO:0005737	cytoplasm			C	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016563	transcription activator activity	PMID:10506196^[4]	IDA: Inferred from Direct Assay	F	Seeded from EcoCyc 11.1^[3].	complete
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MNFQQLKIIR EAARQDYNLT EVANMLFTSQ SGVSRHIREL EDELGIEIFV RRGKRLLGMT EPGKALLVIA ERILNEASNV RRLADLFTND TSGVLTIATT HTQARYSLPE VIKAFRELFP EVRLELIQGT PQEIATLLQN GEADIGIASE RLSNDPQLVA FPWFRWHHSL LVPHDHPLTQ ISPLTLESIA KWPLITYRQG ITGRSRIDDA FARKGLLADI VLSAQDSDVI KTYVALGLGI GLVAEQSSGE QEEENLIRLD TRHLFDANTV WLGLKRGQLQ RNYVWRFLEL CNAGLSVEDI KRQVMESSEE EIDYQI
Mol. Wt	35.86 kDa (calc) ^[2]
pI
Extinction coefficient	36440 - 36565 (calc based on 6 Y, 5 W, and 1 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:G7071-MONOMER
SwissModel (EcoliWiki Page)	SwissModel:Q47083
UniProt (EcoliWiki Page)	UniProt:Q47083
PFAM (EcoliWiki Page)	PFAM:PF00126
RefSeq (EcoliWiki Page)	RefSeq:NP_416492
ModBase (EcoliWiki Page)	ModBase:Q47083
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 van Der Ploeg, JR et al. (1999) The Escherichia coli ssuEADCB gene cluster is required for the utilization of sulfur from aliphatic sulfonates and is regulated by the transcriptional activator Cbl. J. Biol. Chem. 274 29358-65 PubMed

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-!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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-GO:0006790
+[[Category:GO:0006790_!_sulfur_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006790_!_sulfur_metabolic_process GO:0006790]
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 sulfur metabolic process
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 required fields missing
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-GO:0006350
+[[Category:GO:0006350_!_transcription]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006350_!_transcription GO:0006350]
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 transcription
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+[[PMID:10506196]]<ref name=PMID:10506196/>
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+IDA: Inferred from Direct Assay
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 P
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 Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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-required fields missing
+complete
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-GO:0019344
+[[Category:GO:0019344_!_cysteine_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0019344_!_cysteine_biosynthetic_process GO:0019344]
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 cysteine biosynthetic process
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 required fields missing
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-GO:0016564
+[[Category:GO:0016564_!_transcription_repressor_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016564_!_transcription_repressor_activity GO:0016564]
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 transcription repressor activity
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 required fields missing
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-GO:0005737
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 cytoplasm
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 required fields missing
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-GO:0016563
+[[Category:GO:0016563_!_transcription_activator_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016563_!_transcription_activator_activity GO:0016563]
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 transcription activator activity
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+[[PMID:10506196]]<ref name=PMID:10506196/>
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+IDA: Inferred from Direct Assay
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 F
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 Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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-required fields missing
+complete
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cbl:Gene Product(s): Difference between revisions

Revision as of 20:52, 17 July 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

cbl:Gene Product(s): Difference between revisions

Revision as of 20:52, 17 July 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search