hokC:Gene Product(s): Difference between revisions

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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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could be indirect   
could be indirect   
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From EcoCyc<ref name='LIB:EcoCyc11.1'/>   
From EcoCyc<ref name='LIB:EcoCyc11.1'/>   
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1490 - 1740 (calc based on 1 Y, 0 W, and 2 C residues)  
1490 - 1740 (calc based on 1 Y, 0 W, and 2 C residues)  
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!Type!!Residues!!Description!!Notes
!Type!!Residues!!Description!!Notes
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!Structure Type!!Organism!!Accession!!Residues covered!!Notes
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
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!Resource type!!Source!!Notes/Reference
!Resource type!!Source!!Notes/Reference
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!Name!!URL!!Comments
!Name!!URL!!Comments
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Revision as of 08:50, 30 April 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

HokC product

Synonyms

toxic membrane protein, small product[1], B4412 product[2][1], Gef product[2][1], HokC product[2][1]

Product description

HokC, Gef toxin; interferes with membrane function when in excess[2][3];

Component of ; Gef dimer[2][3]

EC number (for enzymes)
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes

Protein

Subunits of Gef dimer

could be indirect

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Notes

Localization

Compartment Description Evidence Notes

plasma membrane

From EcoCyc[3]

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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MKQHKAMIVA LIVICITAVV AALVTRKDLC EVHIRTGQTE VAVFTAYESE
Mol. Wt

5.5 kDa (calc) [2]

pI
Extinction coefficient

1490 - 1740 (calc based on 1 Y, 0 W, and 2 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes
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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:MONOMER0-1564

UniProt (EcoliWiki Page)

UniProt:P0ACG4

PFAM (EcoliWiki Page)

PFAM:PF01848

RefSeq (EcoliWiki Page)

RefSeq:YP_025292

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:GEF-MONOMER

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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