arnC:Gene: Difference between revisions

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''yfbF, ECK2247, b2254, JW2248, pmrF, ORF2''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yfbF, ECK2247, b2254, JW2248, pmrF, ORF2''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!Feature type!!Location!!Description
!Feature type!!Location!!Description
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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Primer 2:  
Primer 2:  
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Revision as of 08:29, 30 April 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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Standard name

arnC

Mnemonic
Synonyms

yfbF, ECK2247, b2254, JW2248, pmrF, ORF2[1][2]

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

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Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

50.98 minutes 

MG1655: 2365093..2366061
gbrowse_img.php?coord=2364093..2367061&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2371741..2372709
gbrowse_img.php?coord=2370741..2373709&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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Feature type Location Description
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

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Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7167

EchoBASE (EcoliWiki Page)

EchoBASE:EB3843

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2254

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2796

EcoGene (EcoliWiki Page)

EcoGene:EG14090

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z3512

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed


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