matC:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
edited by 127.0.0.1 via TableEdit
Edited by wikibot
Line 45: Line 45:
''yagY, ECK0291, b0292, JW0286''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''yagY, ECK0291, b0292, JW0286''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.T46a9aca877f79&page=11159&pagename={{FULLPAGENAMEE}} edit table]
|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.T46a9aca877f79&page=11159&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.T46a9aca877f79-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.T46a9aca877f79-->
Line 92: Line 92:
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:308582..309250&plugin_action=Go FASTA Dump]  
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:308582..309250&plugin_action=Go FASTA Dump]  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.V46a9aca8f0bbd&page=11159&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.V46a9aca8f0bbd&page=11159&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.V46a9aca8f0bbd-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.V46a9aca8f0bbd-->
Line 113: Line 113:
!Feature type!!Location!!Description
!Feature type!!Location!!Description
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.A46a9aca99ab32&page=11159&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.A46a9aca99ab32&page=11159&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.A46a9aca99ab32-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.A46a9aca99ab32-->
Line 134: Line 134:
!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.D46a9aca9dbb30&page=11159&pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.D46a9aca9dbb30&page=11159&pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.D46a9aca9dbb30-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.D46a9aca9dbb30-->
Line 170: Line 170:
Primer 2:  
Primer 2:  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.N46a9acaa857c8&page=11159&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.N46a9acaa857c8&page=11159&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.N46a9acaa857c8-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.N46a9acaa857c8-->
Line 233: Line 233:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.W46a9acab1bdf0&page=11159&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.W46a9acab1bdf0&page=11159&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.W46a9acab1bdf0-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.W46a9acab1bdf0-->
Line 254: Line 254:
!Name!!URL!!Comments
!Name!!URL!!Comments
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.U46a679d888908&page=11159&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11159.U46a679d888908&page=11159&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.U46a679d888908-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.11159.U46a679d888908-->

Revision as of 08:06, 30 April 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


Standard name

matC

Mnemonic
Synonyms

yagY, ECK0291, b0292, JW0286[1][2]

edit table

See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

[back to top]


Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

6.65 minutes 

MG1655: 309250..308582
gbrowse_img.php?coord=307582..310250&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 309250..308582
gbrowse_img.php?coord=307582..310250&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

edit table

See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

[back to top]


Feature type Location Description
edit table

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

[back to top]


Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table

See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

[back to top]


Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

edit table

See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6163

EchoBASE (EcoliWiki Page)

EchoBASE:EB3334

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0292

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0403

EcoGene (EcoliWiki Page)

EcoGene:EG13564

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YAGY

edit table

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed


Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=matC:Gene&oldid=390228"