topA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415790&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415790&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:58, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027829 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017117 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G31210 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022721 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000022999 (score: 0.134)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00034105 (score: 1.000; bootstrap: 100%)
  • WBGene00039708 (score: 0.144)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006596 (score: 1.000; bootstrap: 100%)
  • WBGene00012995 (score: 0.141)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026983 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000022795 (score: 0.136)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016196 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000000598 (score: 0.151)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0217608 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0040268 (score: 1.000; bootstrap: 100%)
  • FBgn0026015 (score: 0.095)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10090-PA (score: 1.000; bootstrap: 100%)
  • GA17464-PA (score: 0.100)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000008036 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000002248 (score: 0.116)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000215840 (score: 1.000; bootstrap: 100%)
  • ENSP00000353166 (score: 0.155)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019022 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000017797 (score: 0.121)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017120 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000022073 (score: 0.131)

From Inparanoid:20070104

Mus musculus

  • MGI:1197527 (score: 1.000; bootstrap: 100%)
  • MGI:1333803 (score: 0.135)

From Inparanoid:20070104

Oryza gramene

  • Q5VMY4 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000024315 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000046426 (score: 0.154)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000002524 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000006848 (score: 0.129)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR234W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC16G52c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156273 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000136008 (score: 0.120)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00011897001 (score: 1.000; bootstrap: 100%)
  • GSTENP00001410001 (score: 0.184)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000040195 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000012696 (score: 0.147)

From Inparanoid:20070104

Shigella flexneri

TOPA

From SHIGELLACYC

E. coli O157

TOPA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF01751

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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Categories

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