suhB:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417028&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417028&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:58, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000023742 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000011437 (score: 0.052)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025568 (score: 1.000; bootstrap: 94%)
  • ENSAPMP00000005924 (score: 0.136)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G02870 (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015548 (score: 1.000; bootstrap: 99%)
  • ENSBTAP00000025956 (score: 0.320)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040566 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008765 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000012482 (score: 1.000; bootstrap: 99%)
  • ENSCAFP00000027751 (score: 0.414)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002314 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-245 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040718-273 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-050522-349 (score: 0.399)
  • ZDB-GENE-050522-349 (score: 0.399)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204100 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037063 (score: 1.000; bootstrap: 100%)
  • FBgn0037064 (score: 0.209)
  • FBgn0036551 (score: 0.098)
  • FBgn0036552 (score: 0.081)
  • FBgn0036553 (score: 0.055)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21751-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025398 (score: 1.000; bootstrap: 99%)
  • ENSGALP00000022380 (score: 0.473)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000256108 (score: 1.000; bootstrap: 99%)
  • ENSP00000269159 (score: 0.437)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000003532 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000013725 (score: 0.403)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007775 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000026772 (score: 0.368)

From Inparanoid:20070104

Mus musculus

  • MGI:2149728 (score: 1.000; bootstrap: 100%)
  • MGI:1933158 (score: 0.422)

From Inparanoid:20070104

Oryza gramene

  • Q6F2U7 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000016801 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000034860 (score: 0.278)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000025147 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000014274 (score: 0.418)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR287W (score: 1.000; bootstrap: 100%)
  • YHR046C (score: 0.410)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000144417 (score: 1.000; bootstrap: 98%)
  • NEWSINFRUP00000144419 (score: 0.529)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00004507001 (score: 1.000; bootstrap: 100%)
  • GSTENP00025538001 (score: 0.525)
  • GSTENP00025537001 (score: 0.503)
  • GSTENP00004506001 (score: 0.146)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002482 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Shigella flexneri

SUHB

From SHIGELLACYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00459

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Notes

Links

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Name URL Comments
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References

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Categories

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