rpsE:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417762&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417762&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:57, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000009664 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G33800 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010843 (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037267 (score: 1.000; bootstrap: 100%)
  • WBGene00041867 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008452 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000010468 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2454 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3401 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215391 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0044510 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19229-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000272418 (score: 1.000; bootstrap: 57%)
  • ENSP00000332440 (score: 0.803)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021341 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Mus musculus

  • MGI:3643279 (score: 1.000; bootstrap: 57%)
  • MGI:3647575 (score: 1.000; bootstrap: 56%)
  • MGI:3645604 (score: 0.983)
  • MGI:105110 (score: 0.983)
  • MGI:3645003 (score: 0.963)
  • MGI:3648968 (score: 0.955)
  • MGI:3647574 (score: 0.946)
  • MGI:3644876 (score: 0.933)
  • MGI:3647516 (score: 0.885)
  • MGI:3643826 (score: 0.838)
  • MGI:3645904 (score: 0.831)
  • MGI:3646785 (score: 0.551)
  • MGI:3648610 (score: 0.270)
  • MGI:3647821 (score: 0.231)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020929 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR251W (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC4G97c (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000129380 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00033426001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPSE

From SHIGELLACYC

E. coli O157

RPSE

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00333

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Notes

Links

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Name URL Comments
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References

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Categories

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