rpoA:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417754&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417754&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:57, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Oryza gramene

  • Q7GED1 (score: 1.000; bootstrap: 100%)
  • Q6YLW9 (score: 1.000; bootstrap: 100%)
  • Q6YLW3 (score: 1.000; bootstrap: 100%)
  • P12073 (score: 1.000; bootstrap: 100%)
  • Q7GED0 (score: 1.000; bootstrap: 100%)
  • Q6YLW2 (score: 1.000; bootstrap: 100%)
  • P92892 (score: 1.000; bootstrap: 100%)
  • Q7GED9 (score: 1.000; bootstrap: 100%)
  • P92429 (score: 1.000; bootstrap: 100%)
  • Q8MAJ0 (score: 1.000; bootstrap: 100%)
  • Q7H6I6 (score: 1.000; bootstrap: 100%)
  • Q7H6I3 (score: 1.000; bootstrap: 100%)
  • Q7H6I2 (score: 1.000; bootstrap: 100%)
  • Q7H6I1 (score: 1.000; bootstrap: 100%)
  • Q7H6H8 (score: 1.000; bootstrap: 100%)
  • Q7H6H6 (score: 1.000; bootstrap: 100%)
  • Q7H6H1 (score: 1.000; bootstrap: 100%)
  • Q7H6G9 (score: 1.000; bootstrap: 100%)
  • Q7H6G7 (score: 1.000; bootstrap: 100%)
  • Q7H6G6 (score: 1.000; bootstrap: 100%)
  • Q7H6G5 (score: 1.000; bootstrap: 100%)
  • Q7H6G4 (score: 1.000; bootstrap: 100%)
  • Q7H6G2 (score: 1.000; bootstrap: 100%)
  • Q7GED7 (score: 1.000; bootstrap: 100%)
  • Q7GEC5 (score: 1.000; bootstrap: 100%)
  • Q6USB6 (score: 1.000; bootstrap: 100%)
  • P92906 (score: 1.000; bootstrap: 100%)
  • Q7H6G1 (score: 1.000; bootstrap: 100%)
  • Q7H6I5 (score: 1.000; bootstrap: 100%)
  • P93993 (score: 1.000; bootstrap: 100%)
  • P93974 (score: 1.000; bootstrap: 100%)
  • Q7H6I8 (score: 1.000; bootstrap: 100%)
  • Q7H6F7 (score: 1.000; bootstrap: 100%)
  • Q7GEC8 (score: 1.000; bootstrap: 100%)
  • Q539W3 (score: 1.000; bootstrap: 100%)
  • Q539W0 (score: 1.000; bootstrap: 100%)
  • Q539V9 (score: 1.000; bootstrap: 100%)
  • Q539V7 (score: 1.000; bootstrap: 100%)
  • Q539V5 (score: 1.000; bootstrap: 100%)
  • P92903 (score: 1.000; bootstrap: 100%)
  • Q7H6F6 (score: 1.000; bootstrap: 100%)
  • Q6YLW4 (score: 1.000; bootstrap: 100%)
  • Q7GED2 (score: 1.000; bootstrap: 100%)
  • Q7H6H4 (score: 1.000; bootstrap: 100%)
  • Q7H6J3 (score: 1.000; bootstrap: 100%)
  • P93968 (score: 0.998)
  • P92418 (score: 0.998)
  • Q6YLW7 (score: 0.996)
  • Q6YLW6 (score: 0.996)
  • Q8MAI8 (score: 0.996)
  • P92209 (score: 0.996)
  • Q7H6I7 (score: 0.996)
  • Q7GEC7 (score: 0.996)
  • Q7GEC4 (score: 0.996)
  • P92900 (score: 0.996)
  • Q7H6J0 (score: 0.996)
  • Q7H6J1 (score: 0.996)
  • Q7H6J2 (score: 0.996)
  • Q539V4 (score: 0.996)
  • Q6YLV9 (score: 0.995)
  • Q540Z1 (score: 0.995)
  • P92439 (score: 0.995)
  • Q8MAI6 (score: 0.995)
  • P92220 (score: 0.995)
  • P93964 (score: 0.995)
  • Q6YLW5 (score: 0.995)
  • P93956 (score: 0.995)
  • P92392 (score: 0.995)
  • Q8MAI9 (score: 0.991)
  • Q539W2 (score: 0.991)
  • P93960 (score: 0.988)
  • P93962 (score: 0.988)
  • P92389 (score: 0.982)
  • Q539W1 (score: 0.982)
  • P92225 (score: 0.980)
  • Q539V6 (score: 0.922)
  • Q6L370 (score: 0.915)
  • Q6ENT2 (score: 0.915)
  • P09562 (score: 0.915)
  • Q6Z507 (score: 0.891)
  • Q6QY54 (score: 0.891)
  • P12090 (score: 0.891)
  • Q6ENE2 (score: 0.891)
  • Q8S1Q6 (score: 0.888)
  • Q7X6E0 (score: 0.877)
  • Q7DNA8 (score: 0.877)
  • Q8SAU1 (score: 0.875)
  • Q7G6A7 (score: 0.875)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000043398 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPOA

From SHIGELLACYC

E. coli O157

RPOA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF01193

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Notes

Links

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Name URL Comments
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References

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