adrA:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
imported>WikiEntryBot
Automated import of articles
imported>WikiEntryBot
Automated import of articles
Line 28: Line 28:
==Nomenclature==
==Nomenclature==
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c40893ea-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c40893ea-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|{{Prettytable}}
{|{{Prettytable}}
|-
|-
Line 48: Line 53:
*
*
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c40893ea&page=20390&pagename={{FULLPAGENAMEE}} edit table]
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c40893ea&page=20390&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c40893ea-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c40893ea-->
Line 61: Line 66:
<big>'''Gene Ontology'''</big>
<big>'''Gene Ontology'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.P46aa2c4182676-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.P46aa2c4182676-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='154186'  
{|class = 'sortable' {{Prettytable}} id='154186'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.P46aa2c4182676&page=20390&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.P46aa2c4182676&page=20390&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.P46aa2c4182676-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.P46aa2c4182676-->
Line 73: Line 83:
<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.O46aa2c41f2827-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.O46aa2c41f2827-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='154187'  
{|class = 'sortable' {{Prettytable}} id='154187'  
|- {{table heading style}}
|- {{table heading style}}
!Partner Type!!Partner!!Notes
!Partner Type!!Partner!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.O46aa2c41f2827&page=20390&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.O46aa2c41f2827&page=20390&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.O46aa2c41f2827-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.O46aa2c41f2827-->
Line 88: Line 103:
==Localization==
==Localization==
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c42a32ce-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c42a32ce-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='154188'  
{|class = 'sortable' {{Prettytable}} id='154188'  
|- {{table heading style}}
|- {{table heading style}}
Line 102: Line 122:
From EcoCyc<ref name='LIB:EcoCyc11.1'/>   
From EcoCyc<ref name='LIB:EcoCyc11.1'/>   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c42a32ce&page=20390&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c42a32ce&page=20390&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c42a32ce-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c42a32ce-->
{{Product_localization_help}}
<protect><!--Localization_notes--></protect>
<protect><!--Localization_notes--></protect>


Line 115: Line 136:
<span id="Sequence"></span><big>'''Physical Properties'''</big>
<span id="Sequence"></span><big>'''Physical Properties'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.M46aa2c4414e55-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.M46aa2c4414e55-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|{{Prettytable}}
{|{{Prettytable}}
|-
|-
Line 141: Line 167:
80440 - 80815 (calc based on 6 Y, 13 W, and 3 C residues)  
80440 - 80815 (calc based on 6 Y, 13 W, and 3 C residues)  
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.M46aa2c4414e55&page=20390&pagename={{FULLPAGENAMEE}} edit table]
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.M46aa2c4414e55&page=20390&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.M46aa2c4414e55-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.M46aa2c4414e55-->
Line 148: Line 174:
<big>'''Domains/Motifs/Modification Sites'''</big>
<big>'''Domains/Motifs/Modification Sites'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.V46aa2c446e27b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.V46aa2c446e27b-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='154190'  
{|class = 'sortable' {{Prettytable}} id='154190'  
|- {{table heading style}}
|- {{table heading style}}
!Type!!Residues!!Description!!Notes
!Type!!Residues!!Description!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.V46aa2c446e27b&page=20390&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.V46aa2c446e27b&page=20390&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.V46aa2c446e27b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.V46aa2c446e27b-->
Line 160: Line 191:
<span id="Structure"></span><big>'''Structure'''</big>
<span id="Structure"></span><big>'''Structure'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.Y46a7bd926f067-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.Y46a7bd926f067-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='103357'  
{|class = 'sortable' {{Prettytable}} id='103357'  
|- {{table heading style}}
|- {{table heading style}}
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.Y46a7bd926f067&page=20390&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.Y46a7bd926f067&page=20390&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.Y46a7bd926f067-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.Y46a7bd926f067-->
Line 176: Line 212:
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.H46aa2c450e78c-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.H46aa2c450e78c-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='154191'  
{|class = 'sortable' {{Prettytable}} id='154191'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Resource type!!Source!!Notes/Reference
!Resource type!!Source!!Notes/Reference
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.H46aa2c450e78c&page=20390&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.H46aa2c450e78c&page=20390&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.H46aa2c450e78c-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.H46aa2c450e78c-->
Line 192: Line 233:
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.I46aa2c4558ff6-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.I46aa2c4558ff6-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='154192'  
{|class = 'sortable' {{Prettytable}} id='154192'  
|- {{table_heading_style}}
|- {{table_heading_style}}
Line 225: Line 271:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.I46aa2c4558ff6&page=20390&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.I46aa2c4558ff6&page=20390&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.I46aa2c4558ff6-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.I46aa2c4558ff6-->
Line 236: Line 282:
{{BacktoTop}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.G46a7bd950eb9b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.G46a7bd950eb9b-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='103359'  
{|class = 'sortable' {{Prettytable}} id='103359'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!Name!!URL!!Comments
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.20390.G46a7bd950eb9b&page=20390&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20390.G46a7bd950eb9b&page=20390&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.G46a7bd950eb9b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.G46a7bd950eb9b-->
{{Links_help}}
{{Links_help}}
<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
Line 253: Line 306:
__NOTOC__
__NOTOC__
</noinclude>
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Location:membrane]]

Revision as of 07:32, 2 August 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YaiC product

Synonyms

predicted diguanylate cyclase product[1], AdrA product[2][1], YaiC product[2][1], B0385 product[2][1]

Product description

predicted diguanylate cyclase[2][3]

EC number (for enzymes)
edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes
edit table

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes

membrane

From EcoCyc[3]

edit table

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

[back to top]


Physical Properties

Sequence

at EcoCyc

MFPKIMNDEN FFKKAAAHGE EPPLTPQNEH QRSGLRFARR VRLPRAVGLA GMFLPIASTL
VSHPPPGWWW LVLVGWAFVW PHLAWQIASR AVDPLSREIY NLKTDAVLAG MWVGVMGVNV
LPSTAMLMIM CLNLMGAGGP RLFVAGLVLM VVSCLVTLEL TGITVSFNSA PLEWWLSLPI
IVIYPLLFGW VSYQTATKLA EHKRRLQVMS TRDGMTGVYN RRHWETMLRN EFDNCRRHNR
DATLLIIDID HFKSINDTWG HDVGDEAIVA LTRQLQITLR GSDVIGRFGG DEFAVIMSGT
PAESAITAML RVHEGLNTLR LPNTPQVTLR ISVGVAPLNP QMSHYREWLK SADLALYKAK
KAGRNRTEVA A
Mol. Wt

41.54 kDa (calc) [2]

pI
Extinction coefficient

80440 - 80815 (calc based on 6 Y, 13 W, and 3 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
edit table

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structure Type Organism Accession Residues covered Notes
edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

[back to top]


Resource type Source Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11257-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AAP1

PFAM (EcoliWiki Page)

PFAM:PF05230

RefSeq (EcoliWiki Page)

RefSeq:NP_414919

edit table

See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

[back to top]