nfi:Expression: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
Newer edit →
imported>WikiEntryBot
Automated import of articles
 
imported>WikiEntryBot
Automated import of articles
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|nfi}}{{Tab|Gene|nfi}}{{Tab|Gene Product(s)|nfi}}{{Tab On|Expression|nfi}}{{Tab|Evolution|nfi}}{{Tab|On One Page|nfi}}{{TabsBottom}}
{{Tab|Quickview|nfi}}{{Tab|Gene|nfi}}{{Tab|Gene Product(s)|nfi}}{{Tab On|Expression|nfi}}{{Tab|Evolution|nfi}}{{Tab|On One Page|nfi}}{{TabsBottom}}
Line 13: Line 22:
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
</noinclude>[[Category:Txn_unit:nudC]]
[[Category:Txn_unit:nudC]]
</noinclude>
==Overview==
==Overview==
{{Expression_overview_placeholder}}
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
<protect>
{|{{Prettytable}}
{|{{Prettytable}}
|-
|-
|<!--box uid=421aa90e079fa326b6494f812ad13e79..D46a05e286d8f0-->
|<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.K46ab87372f18d-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='83906'  
{|class = 'sortable' {{Prettytable}} id='204853'  
|- {{table heading style}}
|- {{table heading style}}
!Transcription unit(s)
!Transcription unit(s)
Line 29: Line 40:
[[:Category:Txn_unit:nudC|nudC]]  
[[:Category:Txn_unit:nudC|nudC]]  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..D46a05e286d8f0&page=&pagename={{FULLPAGENAMEE}} edit table]
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.42879.K46ab87372f18d&page=42879&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..D46a05e286d8f0-->||{{RegulonDBfig|ECK120001843.jpg|NFI}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.K46ab87372f18d-->||{{RegulonDBfig|ECK120001843.jpg|NFI}}
|}
|}
{{expression_transcription_help}}
{{expression_transcription_help}}
Line 39: Line 50:


==Translation and Regulation of Translation==
==Translation and Regulation of Translation==
<protect>{{GBrowseFigureByCoord|4196798|4196828|ecoli|MG1655|GenesNew+DNA}}
{{BacktoTop}}
{{Expression_translation_help}}
<protect>{{GBrowseFigureByCoord|4196793|4196833|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled|400|{{Nterm_closeup}} }}
<!--Translation_notes--></protect>
<!--Translation_notes--></protect>
===Notes===
{{Expression_translation_placeholder}}
{{Expression_translation_placeholder}}


==Turnover and Regulation of Turnover==
==Turnover and Regulation of Turnover==
<!--Turnover_notes--></protect>
===Notes===
{{Expression_turnover_placeholder}}
{{Expression_turnover_placeholder}}


==Experimental==
==Experimental==
{{BacktoTop}}
<protect>
<protect>
===Mutations Affecting Expression===
<big>'''Mutations Affecting Expression'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79..Q46a05e28db001-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.T46ab8737f2426-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='83907'  
{|class = 'sortable' {{Prettytable}} id='204854'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..Q46a05e28db001&page=&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.42879.T46ab8737f2426&page=42879&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..Q46a05e28db001-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.T46ab8737f2426-->
{{Expression_allele_table_help}}
{{Expression_allele_table_help}}
===Expression Studies===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..O46a05e2916aec-->
<big>'''Expression Studies'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.N46ab87386db78-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='83908'  
{|class = 'sortable' {{Prettytable}} id='204855'  
|- {{table heading style}}
|- {{table heading style}}
!Type!!Reference!!Notes
!Type!!Reference!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..O46a05e2916aec&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.42879.N46ab87386db78&page=42879&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..O46a05e2916aec-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.N46ab87386db78-->
{{Expression_studies_table_help}}
{{Expression_studies_table_help}}
===Expression Resources===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..F46a05e294012f-->
<big>'''Expression Resources'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.K46ab8738de04f-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='83909'  
{|class = 'sortable' {{Prettytable}} id='204856'  
|- {{table heading style}}
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..F46a05e294012f&page=&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.42879.K46ab8738de04f&page=42879&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..F46a05e294012f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.K46ab8738de04f-->
{{Expression_resource_table_help}}
{{Expression_resource_table_help}}
<protect><!--Expression_experimental_notes--></protect>
<protect><!--Expression_experimental_notes--></protect>
Line 86: Line 104:




==Accessions Related to nfi Expression==
==Accessions Related to ''nfi'' Expression==
<!--box uid=421aa90e079fa326b6494f812ad13e79..Z46a05e296b939-->
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.S46ab87395ca67-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='83910'  
{|class = 'sortable' {{Prettytable}} id='204857'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!Database!!Accession!!Notes
Line 121: Line 140:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..Z46a05e296b939&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.42879.S46ab87395ca67&page=42879&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..Z46a05e296b939-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.S46ab87395ca67-->
{{Expression_accessions_table_help}}
{{Expression_accessions_table_help}}
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
{{EXPRESSION_ACCESSIONS_NOTES}}
 


==Links==
==Links==
 
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.G46a7dd77c0b80-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='106897'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.42879.G46a7dd77c0b80&page=42879&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.42879.G46a7dd77c0b80-->
{{Links_help}}
<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references/>
__NOTOC__
__NOTOC__
</noinclude>
</noinclude>

Revision as of 18:13, 28 July 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

[back to top]


Transcription unit(s)

nudC

edit table
Figure courtesy of RegulonDB

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


gbrowse_img.php?coord=4196793..4196833&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


Mutations Affecting Expression

Allele Name Mutation Phenotype Reference
edit table

See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Expression Studies

Type Reference Notes
edit table

See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Expression Resources

Resource Name Resource Type Description Source Notes
edit table

See Help:Expression_resources for help entering or editing information in this section of EcoliWiki. <protect>

Notes

Accessions Related to nfi Expression

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11915

EchoBASE (EcoliWiki Page)

EchoBASE:EB1859

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3998

EcoGene (EcoliWiki Page)

EcoGene:EG11915

edit table

See Help:Expression_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=nfi:Expression&oldid=176481"