csrA:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2691, b2696, JW2666, zfiA''<ref name='LIB:Riley_2006'/>
''ECK2691, b2696, JW2666, zfiA''<ref name='LIB:Riley_2006'/>, zfiA''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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pleiotropic regulatory protein for carbon source metabolism<ref name='LIB:Riley_2006'/>, B2696<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ZfiA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''pleiotropic regulatory protein for carbon source metabolism<ref name='LIB:Riley_2006'/>, B2696<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ZfiA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2691, JW2666, zfiA, b2696''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=csrA&s=search PortEco search(csrA)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=csrA&loc=MG1655:2817168..2816983,W3110:2817802..2817617,DH10B:2909710..2909525,REL606:2714005..2713820,BW2952:2702795..2702980 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2702795&end=2702980&gene=csrA&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csrA+AND+escherichia+coli Pubmed(csrA)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=csrA Textpresso(csrA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=csrA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11447]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001410&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=csrA&loc=MG1655%3A2817168..2816983,W3110%3A2817802..2817617,DH10B%3A2909710..2909525,REL606%3A2714005..2713820,BW2952%3A2702795..2702980]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2702795&end=2702980&gene=csrA&aa=mliltrrvgetlmigdevtvtvlgvkgnqvrigvnapkevsvhreeiyqriqaeksqqssy]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csrA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=csrA]]&nbsp;&nbsp;


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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

csrA

Gene Synonym(s)

ECK2691, b2696, JW2666, zfiA[1], zfiA

Product Desc.

carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties[2][3];

Component of CsrA complex with CsrB RNA[3]

Global regulator of carbon source metabolism; CsrA exerts reciprocal effects on glycolysis versus gluconeogenesis and glycogen biosynthesis; glgC mRNA-binding activity blocks GlgC translation; csrB RNA inhibits csrA[4]

Product Synonyms(s)

pleiotropic regulatory protein for carbon source metabolism[1], B2696[2][1], ZfiA[2][1], CsrA[2][1] , ECK2691, JW2666, zfiA, b2696

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): csrA[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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Recombinant CsrA-His6 was N-terminally sequenced, but this does not Verify since translation start was forced at ATG: Met is not clipped: MLIL start. CsrA also postively regulates FlhCD post-translationally, and hence is required for motility.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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