yciT:Gene: Difference between revisions

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!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''yciT, ECK1279, b1284, JW1276'', deoT<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yciT, ECK1279, b1284, JW1276'', deoT<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, deoT, JW1276''


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6638 ECOCYC:G6638]
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Escherichia coli str. K-12 substr. MG1655
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG13905 EcoGene:EG13905]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=945869 GeneID:945869]
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Escherichia coli str. K-12 substr. MG1655


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Revision as of 04:08, 24 September 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

yciT

Mnemonic

Systematic nomenclature

Synonyms

yciT, ECK1279, b1284, JW1276, deoT[1][2], deoT, JW1276

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

28.92 minutes 

MG1655: 1342370..1341621
<gbrowseImage> name=NC_000913:1341621..1342370 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1342717..1341968
<gbrowseImage> name=NC_012967:1341968..1342717 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1232470..1233219
<gbrowseImage> name=NC_012759:1232470..1233219 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1346060..1345311
<gbrowseImage> name=AC_000091:1345311..1346060 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1431766..1431017
<gbrowseImage> name=NC_010473:1431017..1431766 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔyciT721::kan

PMID:16738554[3]

CGSC:104076


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

18B6

Kohara Phage

Genobase

PMID:3038334[5]

E14F6

Kohara Phage

Genobase

PMID:3038334[5]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

ECOCYC:G6638

Escherichia coli str. K-12 substr. MG1655

EcoGene (EcoliWiki Page)

EcoGene:EG13905

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945869

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.0 5.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed

Categories

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