cspE:Quickview: Difference between revisions
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[http://porteco.org/AjaxSearch.jsp?searchString=cspE&s=search PortEco search(cspE)] [http://ecoliwiki.net/tools/display_dna.php?gene=cspE&loc=MG1655:656515..656724,W3110:657714..657923,DH10B:595847..596056,DH10B:709107..709316,REL606:639873..640082,BW2952:559275..559484 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=559275&end=559484&gene=cspE&aa= | [http://porteco.org/AjaxSearch.jsp?searchString=cspE&s=search PortEco search(cspE)] [http://ecoliwiki.net/tools/display_dna.php?gene=cspE&loc=MG1655:656515..656724,W3110:657714..657923,DH10B:595847..596056,DH10B:709107..709316,REL606:639873..640082,BW2952:559275..559484 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=559275&end=559484&gene=cspE&aa= Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cspE+AND+escherichia+coli Pubmed(cspE)] [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cspE Textpresso(cspE)] | ||
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Revision as of 21:45, 15 August 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
cspE |
|---|---|
| Gene Synonym(s) |
ECK0616, b0623, JW0618, gicA, msmC[1] |
| Product Desc. |
cold shock protein CspE[2]; transcription antiterminator and regulator of RNA stability[3] Binds and melts RNA, involved in cold acclimation; binds ssDNA; high copy protects the chromosome from decondensation by camphor and increases DNA supercoiling; dimeric[4] |
| Product Synonyms(s) |
DNA-binding transcriptional repressor[1], B0623[2][1], MsmC[2][1], GicA[2][1], CspE[2][1] |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
PortEco search(cspE) DNA display Protein display Pubmed(cspE) Textpresso(cspE) |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The cspABEG deletion BX04 is cold-sensitive and forms filaments at 15C (Xia, 2001). CspE is a cold shock protein homolog, but is constitutively expressed at 37C. CspE has transcription antitermination activity. CspE affects rpoS and uspA expression. CspE is a negative regulator of cspA transcription. CspE binds ssDNA containing six or more contiguous dT residues with high affinity (Johnston, 2006).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.