Textpresso: Difference between revisions

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* [http://ecoliwiki.net/textpresso/ EcoliWiki]
* [http://ecoliwiki.net/textpresso/ EcoliWiki]
* [http://ecocyc.org/ecocyc/textpresso.shtml EcoCyc]
* [http://ecocyc.org/ecocyc/textpresso.shtml EcoCyc]
* [http://www.ecolihub.org/ecoli_textpresso.html EcoliHub]
* [http://www.PortEco.org/ecoli_textpresso.html PortEco]
These are not identical - the degreee of overlapping vs. unique papers in each corpus is not known, and the different installations have been customized to different extents.
These are not identical - the degreee of overlapping vs. unique papers in each corpus is not known, and the different installations have been customized to different extents.



Latest revision as of 01:07, 1 July 2011

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Short Description

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Textpresso[1] is a text mining tool created by Hans-Michael Muller, Eimear Kenny and Paul W. Sternberg. The Textpresso website has

  • links to textpresso installations for various organisms and focus areas
  • downloads of the code
  • links to publications

Links

There are currently four publicly accessible Textpresso installations for E. coli

These are not identical - the degreee of overlapping vs. unique papers in each corpus is not known, and the different installations have been customized to different extents.

Requirements

Textpresso installations generally require two components:

  • Textpresso - the engine to search tokenized files
  • Alere - scripts to build the searchable literature corpus

User notes

See Also

References

See Help:References for how to manage references in EcoliWiki.

  1. ↑ Müller, HM et al. (2004) Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol. 2 e309 PubMed