scpB:Gene Product(s): Difference between revisions

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[[uniprot:P52045|UniProt:P52045]]
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Revision as of 17:57, 10 March 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YgfG

Synonyms

methylmalonyl-CoA decarboxylase, biotin-independent[1], B2919[2][1], YgfG[2][1]

Product description

YgfG[2]; ScpB[3];

Component of methylmalonyl-CoA decarboxylase[3]

Methylmalonyl-CoA decarboxylase[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence

GO:0004492

methylmalonyl-CoA decarboxylase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.1.1.41

F

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001753

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018376

P

Seeded from EcoCyc (v14.0)

complete

GO:0004492

methylmalonyl-CoA decarboxylase activity

PMID:10769117[5]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of methylmalonyl-CoA decarboxylase

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MNLSRRNILI KGIFMSYQYV NVVTINKVAV IEFNYGRKLN ALSKVFIDDL MQALSDLNRP
EIRCIILRAP SGSKVFSAGH DIHELPSGGR DPLSYDDPLR QITRMIQKFP KPIISMVEGS
VWGGAFEMIM SSDLIIAAST STFSMTPVNL GVPYNLVGIH NLTRDAGFHI VKELIFTASP
ITAQRALAVG ILNHVVEVEE LEDFTLQMAH HISEKAPLAI AVIKEELRVL GEAHTMNSDE
FERIQGMRRA VYDSEDYQEG MNAFLEKRKP NFVGH
Length

275

Mol. Wt

30.83 kDa

pI

6.6 (calculated)

Extinction coefficient

15,930 - 16,055 (calc based on 7 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

15..183

PF00378 Enoyl-CoA hydratase/isomerase family

PMID:19920124[6]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=scpB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7516-MONOMER

UniProt (EcoliWiki Page)

UniProt:P52045

PFAM (EcoliWiki Page)

Pfam:P52045

RefSeq (EcoliWiki Page)

RefSeq:NP_417394


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Haller, T et al. (2000) Discovering new enzymes and metabolic pathways: conversion of succinate to propionate by Escherichia coli. Biochemistry 39 4622-9 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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