Sandbox: Difference between revisions

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Table edited by Bmcintosh via TableEdit
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====Notes====
* It is difficult to do the experimental conditions form - coding it is difficult even with the db_xref
* Getting the information back out of the form would be even more difficult - ie you could not pick all done @ 37oC


==Genetic Interactions==
==Genetic Interactions==

Revision as of 02:20, 7 October 2010

Welcome to the Sandbox. This page gets wiped periodically, so feel free to edit this page to your heart's content.


New Molecules per Cell table

See Help:Cellular levels

Molecule Organism or Strain Value Units Medium Temperature °C Other (e.g. anaerobic) Growth rate Assay used Notes Reference(s)

RNA

MG1655

7.1

Halflife (min)

foo

bar

foo

bar

quantitative PCR

foo

bar


Notes

  • It is difficult to do the experimental conditions form - coding it is difficult even with the db_xref
  • Getting the information back out of the form would be even more difficult - ie you could not pick all done @ 37oC

Genetic Interactions

This is a sample table for the genetic interactions table. Please imagine that we are looking at the Gene page for yacL.


Interactor Phenotype: Type Phenotype: Description Quantitative Score Availability Reference Notes

rpsT

Alleviates

Double mutant has better fitness than a yacL mutant, as measured by colony size.

S score of 1.63

PMID:18677321[1]


  1. ↑ Butland, G et al. (2008) eSGA: E. coli synthetic genetic array analysis. Nat Methods 5 789-95 PubMed