Mauve: Difference between revisions
Update TableEdit tables. |
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php |
||
| Line 9: | Line 9: | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
{| id="U4a492be7c0ab4" class=" tableEdit Biotools" | {| {{Prettytable}} width='30%' align="right" id="U4a492be7c0ab4" class=" tableEdit Biotools" | ||
|- | |- | ||
!align=left | !align=left {{table heading style}} |Link/URL: | ||
|| | || | ||
[http://gel.ahabs.wisc.edu/mauve/ Mauve] | [http://gel.ahabs.wisc.edu/mauve/ Mauve] | ||
|- | |- | ||
!align=left | !align=left {{table heading style}} |What: | ||
|| | || | ||
Constructs multiple genome alignments in the presence of large-scale evolutionary events | Constructs multiple genome alignments in the presence of large-scale evolutionary events | ||
|- | |- | ||
!align=left | !align=left {{table heading style}} |Who: | ||
|| | || | ||
The University of Wisconsin - Madison | The University of Wisconsin - Madison | ||
Revision as of 18:07, 17 June 2010
You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.
<protect>
| Link/URL: | |
|---|---|
| What: |
Constructs multiple genome alignments in the presence of large-scale evolutionary events |
| Who: |
The University of Wisconsin - Madison |
| edit table |
Short Description
Share your knowledge and ideas. How you can help. See Help pages if you need help with using the wiki
Mauve is a multiple-genome alignment program and visualizer.
"Mauve is a software
package that attempts to align orthologous and xenologous regions among two or more genome sequences that have undergone
both local and large-scale changes."[1]
Links
Mauve at the Genome Evolution Laboratory: http://gel.ahabs.wisc.edu/mauve/
Requirements
Mauve pre-built binaries are available for Windows, Mac OS X (10.4+), and Linux. You can also download the source code and compile a version yourself.
User notes
- Uses a heuristic anchor-based approach to find local matches, then extending them to a global alignment.
- Relaxes the criteria that the genomes be colinear
- overview
- Find local alignments (using multiMUMs)
- use the multiMUMs to generate a guide tree (phylogenetic tree)
- use a subset of the multiMUMs to use as anchors (called LCBs)
- perform recursive anchoring to identifiy more alignment anchors
- preform a progressive alignment of each LCB using the guide tree
- inGeno looks like a similar program. Not sure about the differences in methods, though.
--Daniel 19:11, 8 April 2009 (UTC)
See Also
References
See Help:References for how to manage references in EcoliWiki.