ylaB:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
touch the Product_motif_table table.
No edit summary
Line 35: Line 35:
*  
*  
****************************************************************************************** -->{{Product_nomenclature_help}}
****************************************************************************************** -->{{Product_nomenclature_help}}
{| id="F46aa311d761c5"  class=" tableEdit Product_nomenclature_table"   
{|   id="F46aa311d761c5"  class=" tableEdit Product_nomenclature_table"   


|-
|-
Line 78: Line 78:
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
|
GO:0016020
|
membrane
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0472
|
C
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0016021
|
integral to membrane
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0812
|
C
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0005886
|
plasma membrane
|
GO_REF:0000004<br />GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-1003<br />SP_SL:SL-0039
|
C
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 206: Line 149:
*  
*  
****************************************************************************************** -->{{Product_physical_properties_help}}
****************************************************************************************** -->{{Product_physical_properties_help}}
{| id="W46aa31209c46e"  class=" tableEdit Product_phys_prop_table"   
{|   id="W46aa31209c46e"  class=" tableEdit Product_phys_prop_table"   


|-
|-
Line 284: Line 227:
*  
*  
****************************************************************************************** -->{{Product_structure_help}}
****************************************************************************************** -->{{Product_structure_help}}
{| id="A46a7c28becb22"  class=" tableEdit Product_structure_table"   
{|   id="A46a7c28becb22"  class=" tableEdit Product_structure_table"   


|-
|-

Revision as of 22:38, 10 June 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YlaB

Synonyms

conserved inner membrane protein[1], B0457[2][1], YlaB[2][1]

Product description

conserved protein[2]; conserved inner membrane protein[3]

Putative cyclic-di-GMP phosphodiesterase, function unknown[4]

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 2 predicted transmembrane domains

Daley et al. (2005) [5]


edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MLVRTRHLVG LISGVLILSV LLPVGLSIWL AHQQVETSFI EELDTYSSRV AIRANKVATQ
GKDALQELER WQGAACSEAH LMEMRRVSYS YRYIQEVAYI DNNVPQCSSL EHESPPDTFP
EPGKISKDGY RVWLTSHNDL GIIRYMVAMG TAHYVVMIDP ASFIDVIPYS SWQIDAAIIG
NAHNVVITSS DEIAQGIITR LQKTPGEHIE NNGIIYDILP LPEMNISIIT WASTKMLQKG
WHRQVFIWLP LGLVIGLLAA MFVLRILRRI QSPHHRLQDA IENRDICVHY QPIVSLANGK
IVGAEALARW PQTDGSWLSP DSFIPLAQQT GLSEPLTLLI IRSVFEDMGD WLRQHPQQHI
SINLESPVLT SEKIPQLLRD MINHYQVNPR QIALELTERE FADPKTSAPI ISRYREAGHE
IYLDDFGTGY SSLSYLQDLD VDILKIDKSF VDALEYKNVT PHIIEMAKTL KLKMVAEGIE
TSKQEEWLRQ HGVHYGQGWL YSKALPKEDF LRWAEQHL
Length

518

Mol. Wt

58.933 kDa

pI

6.1 (calculated)

Extinction coefficient

99,810 - 100,185 (calc based on 19 Y, 13 W, and 3 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
edit table

<motif_map/>

tmhmm.php?gene=ylaB&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ylaB taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6252-MONOMER

UniProt (EcoliWiki Page)

UniProt:P77473

PFAM (EcoliWiki Page)

PFAM:PF00563

RefSeq (EcoliWiki Page)

RefSeq:NP_414990


edit table


Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ylaB:Gene_Product(s)&oldid=1098658"