ompL:Gene Product(s): Difference between revisions

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touch the Product_motif_table table.
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0005351
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sugar:hydrogen symporter activity
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0762
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0006810
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transport
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0813
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P
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0006811
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ion transport
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0406
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P
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0008643
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carbohydrate transport
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0762
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P
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0016020
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membrane
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GO_REF:0000004<br />GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0472<br />SP_KW:KW-0626
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C
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0016021
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integral to membrane
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0812
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C
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0019867
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outer membrane
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0557
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C
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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GO:0005886
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plasma membrane
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-1003
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C
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0009279
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cell outer membrane
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GO_REF:0000004<br />GO_REF:0000023
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0998<br />SP_SL:SL-0040
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C
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete


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Revision as of 21:42, 10 June 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

OmpL

Synonyms

predicted outer membrane porin L[1], B3875[2][1], YshA[2][1], OmpL[2][1]

Product description

predicted outer membrane porin L[2][3]

Outer membrane porin L[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ybaK

PMID:16606699[5]

Experiment(s):EBI-1146860

Protein

yhdZ

PMID:16606699[5]

Experiment(s):EBI-1146860

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1146860

Protein

tsf

PMID:16606699[5]

Experiment(s):EBI-1146860

Protein

wecG

PMID:16606699[5]

Experiment(s):EBI-1146860
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

Outer Membrane

PMID:11080145

EchoLocation:ompL

outer membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MKKINAIILL SSLTSASVFA GAYVENREAY NLASDQGEVM LRVGYNFDMG AGIMLTNTYN
FQREDELKHG YNEIEGWYPL FKPTDKLTIQ PGGLINDKSI GSGGAVYLDV NYKFVPWFNL
TVRNRYNHNN YSSTDLSGEL DNNDTYEIGT YWNFKITDKF SYTFEPHYFM RVNDFNSSNG
KDHHWEITNT FRYRINEHWL PYFELRWLDR NVEPYHREQN QIRIGTKYFF
Length

230

Mol. Wt

27.2 kDa

pI

6.2 (calculated)

Extinction coefficient

59,820 (calc based on 18 Y, 6 W, and C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-20

UniProt Manual:Signal Peptides

UniProt:P76773


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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ompL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7814-MONOMER

UniProt (EcoliWiki Page)

UniProt:P76773

PFAM (EcoliWiki Page)

PFAM:PF06178

RefSeq (EcoliWiki Page)

RefSeq:NP_418311


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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