rhaM:Gene: Difference between revisions

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!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


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Revision as of 23:22, 10 May 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rhaM

Mnemonic

Rhamnose

Synonyms

yiiL, ECK3894, b3901, JW3872[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

88.18 minutes 

MG1655: 4091461..4091147
gbrowse_img.php?coord=4091147..4091461&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 4072882..4073196
gbrowse_img.php?coord=4072882..4073196&genome=REL606&name=NC_012967&trackset=0&width=300&.png

BW2952

NC_012759: 3980816..3981130
gbrowse_img.php?coord=3980816..3981130&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

W3110

 

W3110: 3543243..3543557
gbrowse_img.php?coord=3543243..3543557&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

rhaMY18F

Y18F

Loss of mutarotase activity

seeded from UniProt:P32156

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11865

EchoBASE (EcoliWiki Page)

EchoBASE:EB1811

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3901

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4850

EcoGene (EcoliWiki Page)

EcoGene:EG11865

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YIIL

ASAP (EcoliWikiPage)

ASAP:ABE-0012729


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

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