hcaC:Gene Product(s): Difference between revisions

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F
F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 
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complete  
complete  

Revision as of 23:20, 3 May 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

HcaC

Synonyms

3-phenylpropionate dioxygenase, predicted ferredoxin subunit[1], B2540[2][1], YfhW[2][1], PhdB[2][1], HcaC[2][1]

Product description

ferredoxin, 3-phenylpropionate dioxygenase system[2][3];

Component of 3-phenylpropionate dioxygenase system[2][3]

3-phenylpropionate/cinnamic acid dioxygenase, ferredoxin subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0051537

2 iron, 2 sulfur cluster binding

PMID:18286376[5]

IDA: Inferred from Direct Assay

F

complete

GO:0005506

iron ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0408

F

Seeded from EcoCyc [6]

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc [6]

complete

GO:0016491

oxidoreductase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005806

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0019439

aromatic compound catabolic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0058

P

Seeded from EcoCyc 12.5 [7]

complete

GO:0046872

metal ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc [6]

complete

GO:0051536

iron-sulfur cluster binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0411

F

Seeded from EcoCyc [6]

complete

GO:0051537

2 iron, 2 sulfur cluster binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0001

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0016052

carbohydrate catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0008695

3-phenylpropionate dioxygenase activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01650

F

Seeded from EcoCyc [6]

complete

GO:0009055

electron carrier activity

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005806
InterPro:IPR017941

F

Seeded from EcoCyc [6]

complete

GO:0022900

electron transport chain

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0249

P

Seeded from EcoCyc [6]

complete

GO:0055114

oxidation reduction

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005806
InterPro:IPR017941

P

Seeded from EcoCyc [6]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of 3-phenylpropionate dioxygenase system

could be indirect

Protein

iscS

PMID:16606699[8]

Experiment(s):EBI-1143195

Protein

cydD

PMID:16606699[8]

Experiment(s):EBI-1143195

Protein

dnaK

PMID:16606699[8]

Experiment(s):EBI-1143195

Protein

ihfB

PMID:16606699[8]

Experiment(s):EBI-1143195
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MNRIYACPVA DVPEGEALRI DTSPVIALFN VGGEFYAIND RCSHGNASMS EGYLEDDATV
ECPLHAASFC LKTGKALCLP ATDPLTTYPV HVEGGDIFID LPEAQP
Length

106

Mol. Wt

11.328 kDa

pI

4.1 (calculated)

Extinction coefficient

5,960 - 6,585 (calc based on 4 Y, W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=hcaC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:HCAC-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0ABW0

UniProt (EcoliWiki Page)

UniProt:P0ABW0

PFAM (EcoliWiki Page)

PFAM:PF00355

RefSeq (EcoliWiki Page)

RefSeq:NP_417035


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Boxhammer, S et al. (2008) Characterization of the recombinant Rieske [2Fe-2S] proteins HcaC and YeaW from E. coli. Biometals 21 459-67 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  7. ↑ 7.0 7.1 7.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  8. ↑ 8.0 8.1 8.2 8.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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