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I am a runner at heart (ok, jogger) and these are from my marathon in 2005.   
I am a runner at heart (ok, jogger) and these are from my marathon in 2005.   
I have finished the Houston Marathon and Half Marathon, Calgary Stampede Half Marathon and too many 5km and 10km races to count.
I have finished the Houston Marathon and Half Marathon, Calgary Stampede Half Marathon and too many 5km and 10km races to count.
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Revision as of 15:17, 14 April 2010

Expert Annotator

You have been awarded the gold star of annotation for being an Expert Annotator and completing 500+ annotations.


Awared by Daniel May, 2009.


Me
Me

About Me

My name is Brenley McIntosh and I am a post-doc in Jim's lab. I have 2 major projects in the lab:

  1. Annotating genes in E. coli and its phages.
  2. Coding and uploading content, including more phage genomes.
Contact Info Email Snail Mail

Brenley Kathleen McIntosh

brenleymcintosh@gmail.com

Dept. of Biochemistry and Biophysics Texas A&M University College Station, Texas 77843-2128

edit table


About the wiki and me

I have a background in phage genetics, but I would love to hear about your project! Please feel free to contact me about content you would like to see on the wiki.


About the pictures

I am a runner at heart (ok, jogger) and these are from my marathon in 2005. I have finished the Houston Marathon and Half Marathon, Calgary Stampede Half Marathon and too many 5km and 10km races to count.

PMIDs

[1] [2] [3] [4] [5] [6] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [22] [23] [24] [25] [26] [27] [28] [29] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [41] [42] [43] [44] [44] [45] [46] [47] [48] [49] [50] [51] [52] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [63] [64] [65] [66] [67] [68] [69] [70] [70] [71] [71] [72] [73] [74] [75] [76] [77] [78] [79] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [90] [91] [92]

  1. ↑ Kashihara, H et al. (2010) Electron microscopic analysis of heat-induced leakage of polyphosphate from a phoU mutant of Escherichia coli. Biosci Biotechnol Biochem 74 865-8 PubMed
  2. ↑ Yang, TY et al. (2010) Posttranscriptional repression of the cel gene of the ColE7 operon by the RNA-binding protein CsrA of Escherichia coli. Nucleic Acids Res 38 3936-51 PubMed
  3. ↑ Fogg, PC et al. (2010) Bacteriophage lambda: a paradigm revisited. J Virol 84 6876-9 PubMed
  4. ↑ Okamura-Ikeda, K et al. (2010) Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism. J Biol Chem 285 18684-92 PubMed
  5. ↑ Ghosh, S et al. (2010) Two modes of interaction of the single-stranded DNA-binding protein of bacteriophage T7 with the DNA polymerase-thioredoxin complex. J Biol Chem 285 18103-12 PubMed
  6. ↑ 6.0 6.1 Nishio, K et al. (2010) Large conformational changes in the Escherichia coli tryptophan synthase beta(2) subunit upon pyridoxal 5'-phosphate binding. FEBS J 277 2157-70 PubMed
  7. ↑ Mukherjee, T et al. (2010) Catalysis of a flavoenzyme-mediated amide hydrolysis. J. Am. Chem. Soc. 132 5550-1 PubMed
  8. ↑ Wang, Y & Lu, HP (2010) Bunching effect in single-molecule T4 lysozyme nonequilibrium conformational dynamics under enzymatic reactions. J Phys Chem B 114 6669-74 PubMed
  9. ↑ Kadokura, H & Beckwith, J (2010) Mechanisms of oxidative protein folding in the bacterial cell envelope. Antioxid Redox Signal 13 1231-46 PubMed
  10. ↑ Paul, D et al. (2010) Glycal formation in crystals of uridine phosphorylase. Biochemistry 49 3499-509 PubMed
  11. ↑ Doroshenko, VG et al. (2010) Construction of an L-phenylalanine-producing tyrosine-prototrophic Escherichia coli strain using tyrA ssrA-like tagged alleles. Biotechnol Lett 32 1117-21 PubMed
  12. ↑ Gonzalez, MD et al. (2010) Multiple interaction domains in FtsL, a protein component of the widely conserved bacterial FtsLBQ cell division complex. J. Bacteriol. 192 2757-68 PubMed
  13. ↑ Zhang, Y et al. (2010) Mutagenesis and functional characterization of the four domains of GlnD, a bifunctional nitrogen sensor protein. J. Bacteriol. 192 2711-21 PubMed
  14. ↑ Garces, F et al. (2010) Molecular architecture of the Mn2+-dependent lactonase UlaG reveals an RNase-like metallo-beta-lactamase fold and a novel quaternary structure. J. Mol. Biol. 398 715-29 PubMed
  15. ↑ Sikora, AL et al. (2010) Kinetic and inhibition studies of dihydroxybenzoate-AMP ligase from Escherichia coli. Biochemistry 49 3648-57 PubMed
  16. ↑ Lacroix, JM & Bohin, JP (2010) Osmoregulated periplasmic glucan polymerization requires constant protein synthesis in Escherichia coli. Curr Microbiol 61 396-400 PubMed
  17. ↑ Shephard, L et al. (2010) Binding and release of the 6S transcriptional control RNA. RNA 16 885-92 PubMed
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  20. ↑ Bhosale, M et al. (2010) Characterization of two M17 family members in Escherichia coli, Peptidase A and Peptidase B. Biochem Biophys Res Commun 395 76-81 PubMed
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  22. ↑ 22.0 22.1 Li, R et al. (2010) CobB regulates Escherichia coli chemotaxis by deacetylating the response regulator CheY. Mol Microbiol 76 1162-74 PubMed
  23. ↑ Rico, AI et al. (2010) Role of Escherichia coli FtsN protein in the assembly and stability of the cell division ring. Mol Microbiol 76 760-71 PubMed
  24. ↑ Coornaert, A et al. (2010) MicA sRNA links the PhoP regulon to cell envelope stress. Mol Microbiol 76 467-79 PubMed
  25. ↑ Maki, K et al. (2010) A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA. Mol Microbiol 76 782-92 PubMed
  26. ↑ Newton, SM et al. (2010) Direct measurements of the outer membrane stage of ferric enterobactin transport: postuptake binding. J Biol Chem 285 17488-97 PubMed
  27. ↑ Sawyer, EB et al. (2010) Aberrant attachment of heme to cytochrome by the Ccm system results in a cysteine persulfide linkage. J Am Chem Soc 132 4974-5 PubMed
  28. ↑ Fischer-Friedrich, E et al. (2010) Intra- and intercellular fluctuations in Min-protein dynamics decrease with cell length. Proc Natl Acad Sci U S A 107 6134-9 PubMed
  29. ↑ 29.0 29.1 Xu, Y et al. (2010) The tip region of the MacA alpha-hairpin is important for the binding to TolC to the Escherichia coli MacAB-TolC pump. Biochem Biophys Res Commun 394 962-5 PubMed
  30. ↑ Kräutler, V et al. (2010) Residual structure in a peptide fragment of the outer membrane protein X under denaturing conditions: a molecular dynamics study. Eur Biophys J 39 1421-32 PubMed
  31. ↑ Bruno-Bárcena, JM et al. (2010) Role of antioxidant enzymes in bacterial resistance to organic acids. Appl. Environ. Microbiol. 76 2747-53 PubMed
  32. ↑ Chou, C et al. (2010) Photocaged t7 RNA polymerase for the light activation of transcription and gene function in pro- and eukaryotic cells. Chembiochem 11 972-7 PubMed
  33. ↑ Motta, ES et al. (2010) Endonuclease IV is the main base excision repair enzyme involved in DNA damage induced by UVA radiation and stannous chloride. J Biomed Biotechnol 2010 376218 PubMed
  34. ↑ Holm, AK et al. (2010) Metabolic and transcriptional response to cofactor perturbations in Escherichia coli. J. Biol. Chem. 285 17498-506 PubMed
  35. ↑ Sherratt, DJ et al. (2010) The Escherichia coli DNA translocase FtsK. Biochem Soc Trans 38 395-8 PubMed
  36. ↑ Campos-Bermudez, VA et al. (2010) Functional dissection of Escherichia coli phosphotransacetylase structural domains and analysis of key compounds involved in activity regulation. FEBS J. 277 1957-66 PubMed
  37. ↑ Zakian, S et al. (2010) Basis of recognition between the NarJ chaperone and the N-terminus of the NarG subunit from Escherichia coli nitrate reductase. FEBS J. 277 1886-95 PubMed
  38. ↑ Englert, DL et al. (2010) Repellent taxis in response to nickel ion requires neither Ni2+ transport nor the periplasmic NikA binding protein. J Bacteriol 192 2633-7 PubMed
  39. ↑ Lukas, H et al. (2010) Regulation of aerobic and anaerobic D-malate metabolism of Escherichia coli by the LysR-type regulator DmlR (YeaT). J. Bacteriol. 192 2503-11 PubMed
  40. ↑ Kasari, V et al. (2010) The Escherichia coli mqsR and ygiT genes encode a new toxin-antitoxin pair. J. Bacteriol. 192 2908-19 PubMed
  41. ↑ 41.0 41.1 Pan, BY et al. (2010) Mutual inhibition of RecQ molecules in DNA unwinding. J Biol Chem 285 15884-93 PubMed
  42. ↑ Najdi, TS et al. (2010) A 'random steady-state' model for the pyruvate dehydrogenase and alpha-ketoglutarate dehydrogenase enzyme complexes. Phys Biol 7 16016 PubMed
  43. ↑ Trunkfield, AE et al. (2010) Inhibition of Escherichia coli glycosyltransferase MurG and Mycobacterium tuberculosis Gal transferase by uridine-linked transition state mimics. Bioorg Med Chem 18 2651-63 PubMed
  44. ↑ 44.0 44.1 Sarraf, NS et al. (2010) Structural basis of the regulation of the CbpA co-chaperone by its specific modulator CbpM. J Mol Biol 398 111-21 PubMed
  45. ↑ Boudvillain, M et al. (2010) Simple enzymatic assays for the in vitro motor activity of transcription termination factor Rho from Escherichia coli. Methods Mol Biol 587 137-54 PubMed
  46. ↑ Taudte, N & Grass, G (2010) Point mutations change specificity and kinetics of metal uptake by ZupT from Escherichia coli. Biometals 23 643-56 PubMed
  47. ↑ Park, AY et al. (2010) A single subunit directs the assembly of the Escherichia coli DNA sliding clamp loader. Structure 18 285-92 PubMed
  48. ↑ Fonville, NC et al. (2010) Role of RecA and the SOS response in thymineless death in Escherichia coli. PLoS Genet. 6 e1000865 PubMed
  49. ↑ Joseph, TC et al. (2010) Functional characterization of trehalose biosynthesis genes from E. coli: an osmolyte involved in stress tolerance. Mol Biotechnol 46 20-5 PubMed
  50. ↑ Sashidhar, B et al. (2010) Highly conserved Asp-204 and Gly-776 are important for activity of the quinoprotein glucose dehydrogenase of Escherichia coli and for mineral phosphate solubilization. J Mol Microbiol Biotechnol 18 109-19 PubMed
  51. ↑ Hsieh, TJ et al. (2010) Twisting of the DNA-binding surface by a beta-strand-bearing proline modulates DNA gyrase activity. Nucleic Acids Res 38 4173-81 PubMed
  52. ↑ 52.0 52.1 Friedrich, T & Hellwig, P (2010) Redox-induced conformational changes within the Escherichia coli NADH ubiquinone oxidoreductase (complex I): an analysis by mutagenesis and FT-IR spectroscopy. Biochim Biophys Acta 1797 659-63 PubMed
  53. ↑ Zhu, W et al. (2010) Modifying thermostability of appA from Escherichia coli. Curr Microbiol 61 267-73 PubMed
  54. ↑ Ivanov, V & Mizuuchi, K (2010) Multiple modes of interconverting dynamic pattern formation by bacterial cell division proteins. Proc Natl Acad Sci U S A 107 8071-8 PubMed
  55. ↑ Andreu, JM et al. (2010) The antibacterial cell division inhibitor PC190723 is an FtsZ polymer-stabilizing agent that induces filament assembly and condensation. J Biol Chem 285 14239-46 PubMed
  56. ↑ Ruiz, C & Levy, SB (2010) Many chromosomal genes modulate MarA-mediated multidrug resistance in Escherichia coli. Antimicrob Agents Chemother 54 2125-34 PubMed
  57. ↑ Mendes, KR et al. (2010) Asymmetric allosteric signaling in aspartate transcarbamoylase. ACS Chem Biol 5 499-506 PubMed
  58. ↑ Belyy, V et al. (2010) The tension-transmitting 'clutch' in the mechanosensitive channel MscS. Nat Struct Mol Biol 17 451-8 PubMed
  59. ↑ Bunner, AE et al. (2010) Kinetic cooperativity in Escherichia coli 30S ribosomal subunit reconstitution reveals additional complexity in the assembly landscape. Proc Natl Acad Sci U S A 107 5417-22 PubMed
  60. ↑ Fang, J et al. (2010) Conformational dynamics of the Escherichia coli DNA polymerase manager proteins UmuD and UmuD'. J. Mol. Biol. 398 40-53 PubMed
  61. ↑ Byrne, RT et al. (2010) The crystal structure of unmodified tRNAPhe from Escherichia coli. Nucleic Acids Res 38 4154-62 PubMed
  62. ↑ Chng, SS et al. (2010) Characterization of the two-protein complex in Escherichia coli responsible for lipopolysaccharide assembly at the outer membrane. Proc Natl Acad Sci U S A 107 5363-8 PubMed
  63. ↑ 63.0 63.1 Kontur, WS et al. (2010) Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate. Biochemistry 49 4361-73 PubMed
  64. ↑ Kefala, G et al. (2010) Structures of the OmpF porin crystallized in the presence of foscholine-12. Protein Sci 19 1117-25 PubMed
  65. ↑ Abdine, A et al. (2010) Structural study of the membrane protein MscL using cell-free expression and solid-state NMR. J Magn Reson 204 155-9 PubMed
  66. ↑ O'Daniel, PI et al. (2010) Elucidation of the structure of the membrane anchor of penicillin-binding protein 5 of Escherichia coli. J Am Chem Soc 132 4110-8 PubMed
  67. ↑ Green, JM et al. (2010) Purification and characterization of the folate catabolic enzyme p-aminobenzoyl-glutamate hydrolase from Escherichia coli. J. Bacteriol. 192 2407-13 PubMed
  68. ↑ Castanié-Cornet, MP et al. (2010) Acid stress response in Escherichia coli: mechanism of regulation of gadA transcription by RcsB and GadE. Nucleic Acids Res 38 3546-54 PubMed
  69. ↑ Downey, CD & McHenry, CS (2010) Chaperoning of a replicative polymerase onto a newly assembled DNA-bound sliding clamp by the clamp loader. Mol Cell 37 481-91 PubMed
  70. ↑ 70.0 70.1 Lund, L et al. (2010) Carbamate transport in carbamoyl phosphate synthetase: a theoretical and experimental investigation. J Am Chem Soc 132 3870-8 PubMed
  71. ↑ 71.0 71.1 Song, HN et al. (2010) Structural rationale for the short branched substrate specificity of the glycogen debranching enzyme GlgX. Proteins 78 1847-55 PubMed
  72. ↑ Dörr, T et al. (2010) Ciprofloxacin causes persister formation by inducing the TisB toxin in Escherichia coli. PLoS Biol 8 e1000317 PubMed
  73. ↑ Chen, C & Deutscher, MP (2010) RNase R is a highly unstable protein regulated by growth phase and stress. RNA 16 667-72 PubMed
  74. ↑ Chan, DI et al. (2010) Molecular dynamics simulations of beta-ketoacyl-, beta-hydroxyacyl-, and trans-2-enoyl-acyl carrier proteins of Escherichia coli. Biochemistry 49 2860-8 PubMed
  75. ↑ Apetrei, A et al. (2010) Unimolecular study of the interaction between the outer membrane protein OmpF from E. coli and an analogue of the HP(2-20) antimicrobial peptide. J Bioenerg Biomembr 42 173-80 PubMed
  76. ↑ Terakado, K et al. (2010) Deleting two C-terminal alpha-helices is effective to crystallize the bacterial ABC transporter Escherichia coli MsbA complexed with AMP-PNP. Acta Crystallogr D Biol Crystallogr 66 319-23 PubMed
  77. ↑ Guo, M et al. (2010) Introduction of a leucine half-zipper engenders multiple high-quality crystals of a recalcitrant tRNA synthetase. Acta Crystallogr D Biol Crystallogr 66 243-50 PubMed
  78. ↑ Khan, MA et al. (2010) A thiolate anion buried within the hydrocarbon ruler perturbs PagP lipid acyl chain selection. Biochemistry 49 2368-79 PubMed
  79. ↑ 79.0 79.1 Langendorf, CG et al. (2010) The X-ray crystal structure of Escherichia coli succinic semialdehyde dehydrogenase; structural insights into NADP+/enzyme interactions. PLoS One 5 e9280 PubMed
  80. ↑ Lewinson, O et al. (2010) A distinct mechanism for the ABC transporter BtuCD-BtuF revealed by the dynamics of complex formation. Nat Struct Mol Biol 17 332-8 PubMed
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  82. ↑ Durand, E et al. (2010) Biochemical dissection of the ATPase TraB, the VirB4 homologue of the Escherichia coli pKM101 conjugation machinery. J. Bacteriol. 192 2315-23 PubMed
  83. ↑ Damaghi, M et al. (2010) pH-dependent interactions guide the folding and gate the transmembrane pore of the beta-barrel membrane protein OmpG. J Mol Biol 397 878-82 PubMed
  84. ↑ Tang, Y et al. (2010) The structure of SecB/OmpA as visualized by electron microscopy: The mature region of the precursor protein binds asymmetrically to SecB. Biochem Biophys Res Commun 393 698-702 PubMed
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  86. ↑ Kostecki, JS et al. (2010) Visualizing interactions along the Escherichia coli twin-arginine translocation pathway using protein fragment complementation. PLoS One 5 e9225 PubMed
  87. ↑ van den Ent, F et al. (2010) Bacterial actin MreB assembles in complex with cell shape protein RodZ. EMBO J 29 1081-90 PubMed
  88. ↑ Choi, W & Harshey, RM (2010) DNA repair by the cryptic endonuclease activity of Mu transposase. Proc. Natl. Acad. Sci. U.S.A. 107 10014-9 PubMed
  89. ↑ Le Derout, J et al. (2010) Hfq affects mRNA levels independently of degradation. BMC Mol Biol 11 17 PubMed
  90. ↑ 90.0 90.1 Cartier, G et al. (2010) Cold adaptation in DEAD-box proteins. Biochemistry 49 2636-46 PubMed
  91. ↑ Ling, J & Söll, D (2010) Severe oxidative stress induces protein mistranslation through impairment of an aminoacyl-tRNA synthetase editing site. Proc Natl Acad Sci U S A 107 4028-33 PubMed
  92. ↑ Johnsen, L et al. (2010) A novel DNA gyrase inhibitor rescues Escherichia coli dnaAcos mutant cells from lethal hyperinitiation. J Antimicrob Chemother 65 924-30 PubMed
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