EcoliWiki:Gene Association File: Difference between revisions
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[[File:GAF Pipeline.jpg|right|frame|See text for description.]] | [[File:GAF Pipeline.jpg|right|frame|See text for description.]] | ||
==Overview== | ==Overview== | ||
[[EcoliWiki]] and [[EcoCyc]] contribute to the [[Gene Ontology (GO)]] by monthly submitting our annotations. | [[EcoliWiki]] and [[EcoCyc]] contribute to the [[Gene Ontology (GO)]] by monthly submitting our annotations. | ||
The two sites' annotations are prepared by the EcoliWiki team (mostly [[User:DanielRenfro|Daniel,) and submitted via [[wikipedia:CVS|CVS]] to the GO Consortium. The figure at right shows the four basic steps to this process: | |||
# Obtain annotations from EcoCyc (quarterly) | |||
# Obtain annotations from EcoliWiki (monthly) | |||
# Merge them and resolve name-conflicts | |||
# Submit to the GO | |||
==Detailed Description== | |||
There are actually two files that get submitted each month. The <tt>gene association</tt> file and the <tt>gp2protein</tt> file. A detailed description of each can be found in the [[http://www.geneontology.org/GO.contents.doc.shtml GO Consortium's documentation]]. | |||
===gene_association.ecocyc=== | |||
====header information==== | |||
===gp2protein.ecocyc=== | |||
==See Also== | ==See Also== | ||
* GO Consortium's specification for the GAF - http://www.geneontology.org/GO.format.annotation.shtml | |||
* gp2protein file notes - http://wiki.geneontology.org/index.php/Gp2protein | |||
Revision as of 21:01, 8 March 2010
Overview
EcoliWiki and EcoCyc contribute to the Gene Ontology (GO) by monthly submitting our annotations.
The two sites' annotations are prepared by the EcoliWiki team (mostly [[User:DanielRenfro|Daniel,) and submitted via CVS to the GO Consortium. The figure at right shows the four basic steps to this process:
- Obtain annotations from EcoCyc (quarterly)
- Obtain annotations from EcoliWiki (monthly)
- Merge them and resolve name-conflicts
- Submit to the GO
Detailed Description
There are actually two files that get submitted each month. The gene association file and the gp2protein file. A detailed description of each can be found in the [GO Consortium's documentation].
gene_association.ecocyc
header information
gp2protein.ecocyc
See Also
- GO Consortium's specification for the GAF - http://www.geneontology.org/GO.format.annotation.shtml
- gp2protein file notes - http://wiki.geneontology.org/index.php/Gp2protein