ygaP:Gene Product(s): Difference between revisions

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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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YgaP  
YgaP  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted inner membrane protein with hydrolase activity<ref name='LIB:Riley_2006'/>, B2668<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgaP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted inner membrane protein with hydrolase activity<ref name='LIB:Riley_2006'/>, B2668<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgaP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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predicted inner membrane protein with hydrolase activity<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted inner membrane protein with hydrolase activity<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Function unknown, rhodanese activity in vitro; tributyltin-inducible via YgaU<ref name='LIB:EcoGene'/>
Function unknown, rhodanese activity in vitro; tributyltin-inducible via YgaU<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
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{|  id="I46aab5a6dc6c0"  class=" tableEdit GO_table_product dataTable"   
{|  id="I46aab5a6dc6c0"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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*  
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{|  id="A46aab5a76d461"  class=" tableEdit Product_interactions_table"   
{|  id="A46aab5a76d461"  class=" tableEdit Product_interactions_table dataTable"   
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|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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{|  id="Z46a84d2392ae6"  class=" tableEdit Product_localization_table"   
{|  id="Z46a84d2392ae6"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes
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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G7398-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G7398-MONOMER at EcoCyc]  
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AGGLILIGVV LGYTVNSGFF LLSGFVGAGL LFAGISGFCG MARLLDKMPW NQRA</pre>  
AGGLILIGVV LGYTVNSGFF LLSGFVGAGL LFAGISGFCG MARLLDKMPW NQRA</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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174
174
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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18.639 kDa
18.639 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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6.9 (calculated)
6.9 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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13,980 - 14,230 (calc based on 2 Y, 2 W, and 2 C residues)
13,980 - 14,230 (calc based on 2 Y, 2 W, and 2 C residues)
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*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="G46aab5a9c5382"  class=" tableEdit Product_motif_table"   
{|  id="G46aab5a9c5382"  class=" tableEdit Product_motif_table dataTable"   
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!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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{|  id="N46aab5aa8e983"  class=" tableEdit Product_resource_table"   
{|  id="N46aab5aa8e983"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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{|  id="X46aab5aaecf0a"  class=" tableEdit Gene_accessions_table"   
{|  id="X46aab5aaecf0a"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="N46a84d27e4deb"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 21:54, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YgaP

Synonyms

predicted inner membrane protein with hydrolase activity[1], B2668[2][1], YgaP[2][1]

Product description

predicted inner membrane protein with hydrolase activity[2][3]

Function unknown, rhodanese activity in vitro; tributyltin-inducible via YgaU[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsI

PMID:16606699[7]

Experiment(s):EBI-1143617

Protein

groL

PMID:16606699[7]

Experiment(s):EBI-1143617

Protein

yaaI

PMID:16606699[7]

Experiment(s):EBI-1143617

Protein

rplB

PMID:16606699[7]

Experiment(s):EBI-1143617
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 2 predicted transmembrane domains

Daley et al. (2005) [8]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MALTTISPHD AQELIARGAK LIDIRDADEY LREHIPEADL APLSVLEQSG LPAKLRHEQI
IFHCQAGKRT SNNADKLAAI AAPAEIFLLE DGIDGWKKAG LPVAVNKSQP LPLMRQVQIA
AGGLILIGVV LGYTVNSGFF LLSGFVGAGL LFAGISGFCG MARLLDKMPW NQRA
Length

174

Mol. Wt

18.639 kDa

pI

6.9 (calculated)

Extinction coefficient

13,980 - 14,230 (calc based on 2 Y, 2 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

tmhmm.php?gene=ygaP&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ygaP taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7398-MONOMER

UniProt (EcoliWiki Page)

UniProt:P55734

RefSeq (EcoliWiki Page)

RefSeq:NP_417154


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

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