soxS:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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SoxS  
SoxS  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B4062<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SoxS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, regulation of superoxide response regulon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B4062<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SoxS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, regulation of superoxide response regulon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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SoxS transcriptional activator<ref name='LIB:EcoCyc10.6'/>; SoxS transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/>
SoxS transcriptional activator<ref name='LIB:EcoCyc10.6'/>; SoxS transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/>
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Global transcription regulator for superoxide response; AraC family<ref name='LIB:EcoGene'/>
Global transcription regulator for superoxide response; AraC family<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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{|  id="T46ab19c279ad2"  class=" tableEdit GO_table_product dataTable"   
{|  id="T46ab19c279ad2"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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{|  id="O46ab19dc56c11"  class=" tableEdit Product_interactions_table"   
{|  id="O46ab19dc56c11"  class=" tableEdit Product_interactions_table dataTable"   
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|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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{|  id="D46ab19dd2d2fd"  class=" tableEdit Product_localization_table"   
{|  id="D46ab19dd2d2fd"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=PD00406 at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=PD00406 at EcoCyc]  
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LAAVELRTTE RPIFDIAMDL GYVSQQTFSR VFRRQFDRTP SDYRHRL</pre>  
LAAVELRTTE RPIFDIAMDL GYVSQQTFSR VFRRQFDRTP SDYRHRL</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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107
107
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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12.91 kDa
12.91 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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10.4 (calculated)
10.4 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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18,450 (calc based on 5 Y, 2 W, and  C residues)
18,450 (calc based on 5 Y, 2 W, and  C residues)
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{|  id="U46ab19df92636"  class=" tableEdit Product_motif_table"   
{|  id="U46ab19df92636"  class=" tableEdit Product_motif_table dataTable"   
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!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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Removed
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[http://www.uniprot.org/uniprot/P0A9E2#section_features UniProt:P0A9E2]  
[http://www.uniprot.org/uniprot/P0A9E2#section_features UniProt:P0A9E2]
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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{|  id="I46ab19e073861"  class=" tableEdit Product_resource_table"   
{|  id="I46ab19e073861"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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{|  id="W46ab19e0dd6ee"  class=" tableEdit Gene_accessions_table"   
{|  id="W46ab19e0dd6ee"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="J46ab19e4812c2"  class=" tableEdit Links_table"   
{|  id="J46ab19e4812c2"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 21:23, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SoxS

Synonyms

DNA-binding transcriptional dual regulator[1], B4062[2][1], SoxS[2][1], regulation of superoxide response regulon[2][1]

Product description

SoxS transcriptional activator[2]; SoxS transcriptional dual regulator[3]

Global transcription regulator for superoxide response; AraC family[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0045449

regulation of transcription

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012287

P

Seeded from EcoCyc [5]

complete

GO:0043565

sequence-specific DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

F

Seeded from EcoCyc [5]

complete

GO:0006355

regulation of transcription, DNA-dependent

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000005
SP_KW:KW-0805

P

Seeded from EcoCyc [5]

complete

GO:0006350

transcription

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0005622

intracellular

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

C

Seeded from EcoCyc [5]

complete

GO:0003700

transcription factor activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

F

Seeded from EcoCyc [5]

complete

GO:0003677

DNA binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR012287
SP_KW:KW-0238

F

Seeded from EcoCyc [5]

complete

GO:0006979

response to oxidative stress

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006805

xenobiotic metabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016563

transcription activator activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016564

transcription repressor activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yibL

PMID:16606699[7]

Experiment(s):EBI-1147365

Protein

rpsI

PMID:16606699[7]

Experiment(s):EBI-1147365

Protein

zwf

PMID:16606699[7]

Experiment(s):EBI-1147365

Protein

rpsD

PMID:16606699[7]

Experiment(s):EBI-1147365

Protein

rpsT

PMID:16606699[7]

Experiment(s):EBI-1147365

Protein

fur

PMID:16606699[7]

Experiment(s):EBI-1147365

Protein

dnaB

PMID:16606699[7]

Experiment(s):EBI-1147365
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MSHQKIIQDL IAWIDEHIDQ PLNIDVVAKK SGYSKWYLQR MFRTVTHQTL GDYIRQRRLL
LAAVELRTTE RPIFDIAMDL GYVSQQTFSR VFRRQFDRTP SDYRHRL
Length

107

Mol. Wt

12.91 kDa

pI

10.4 (calculated)

Extinction coefficient

18,450 (calc based on 5 Y, 2 W, and C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A9E2


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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=soxS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:PD00406

SwissModel (EcoliWiki Page)

SwissModel:P0A9E2

UniProt (EcoliWiki Page)

UniProt:P0A9E2

PFAM (EcoliWiki Page)

PFAM:PF00165

RefSeq (EcoliWiki Page)

RefSeq:NP_418486


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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