livF:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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LivF  
LivF  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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leucine/isoleucine/valine transporter subunit<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3454<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LivF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
leucine/isoleucine/valine transporter subunit<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3454<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LivF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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LivF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
LivF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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High-affinity branched-chain amino acid transport, ATP-binding membrane protein<ref name='LIB:EcoGene'/>
High-affinity branched-chain amino acid transport, ATP-binding membrane protein<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="H46aaeb6082d61"  class=" tableEdit GO_table_product dataTable"   
{|  id="H46aaeb6082d61"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|  id="A46aaeb750b3b0"  class=" tableEdit Product_interactions_table"   
{|  id="A46aaeb750b3b0"  class=" tableEdit Product_interactions_table dataTable"   
|-
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-  
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****************************************************************************************** -->{{Product_localization_help}}
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{|  id="W46aaeb75cda54"  class=" tableEdit Product_localization_table"   
{|  id="W46aaeb75cda54"  class=" tableEdit Product_localization_table"   
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|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes
|-  
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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=LIVF-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=LIVF-MONOMER at EcoCyc]  
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FDTIEQLREQ GMTIFLVEQN ANQALKLADR GYVLENGHVV LSDTGDALLA NEAVRSAYLG G</pre>  
FDTIEQLREQ GMTIFLVEQN ANQALKLADR GYVLENGHVV LSDTGDALLA NEAVRSAYLG G</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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241
241
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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26.863 kDa
26.863 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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6.5 (calculated)
6.5 (calculated)
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|-
!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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16,960 - 17,085 (calc based on 4 Y, 2 W, and 1 C residues)
16,960 - 17,085 (calc based on 4 Y, 2 W, and 1 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="R46aaeb77f327b"  class=" tableEdit Product_motif_table"   
{|  id="R46aaeb77f327b"  class=" tableEdit Product_motif_table dataTable"   
|-
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="R46aaeb78cfc54"  class=" tableEdit Product_resource_table"   
{|  id="R46aaeb78cfc54"  class=" tableEdit Product_resource_table"   
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|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="H46aaeb7943705"  class=" tableEdit Gene_accessions_table"   
{|  id="H46aaeb7943705"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="U46a87adede14e"  class=" tableEdit Links_table"   
{|  id="U46a87adede14e"  class=" tableEdit Links_table"   
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|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 20:19, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

LivF

Synonyms

leucine/isoleucine/valine transporter subunit[1], ATP-binding component of ABC superfamily[1], B3454[2][1], LivF[2][1]

Product description

LivF[2][3]

High-affinity branched-chain amino acid transport, ATP-binding membrane protein[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006865

amino acid transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0029

P

Seeded from EcoCyc [5]

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc [5]

complete

GO:0005524

ATP binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR003439
SP_KW:KW-0067

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0000166

nucleotide binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR003593
SP_KW:KW-0547

F

Seeded from EcoCyc [5]

complete

GO:0005515

protein binding

PMID:16606699[7]

IPI: Inferred from Physical Interaction

UniProtKB:P0A9U6

F

Seeded from EcoCyc [5]

complete

GO:0009099

valine biosynthetic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016887

ATPase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0017111

nucleoside-triphosphatase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc [5]

complete

GO:0009098

leucine biosynthetic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009063

amino acid catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

thrS

PMID:16606699[7]

Experiment(s):EBI-1145928

Protein

glpD

PMID:16606699[7]

Experiment(s):EBI-1145928

Protein

htpG

PMID:16606699[7]

Experiment(s):EBI-1145928

Protein

groL

PMID:16606699[7]

Experiment(s):EBI-1145928
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MRHKMEKVML SFDKVSAHYG KIQALHEVSL HINQGEIVTL IGANGAGKTT LLGTLCGDPR
ATSGRIVFDD KDITDWQTAK IMREAVAIVP EGRRVFSRMT VEENLAMGGF FAERDQFQER
IKWVYELFPR LHERRIQRAG TMSGGEQQML AIGRALMSNP RLLLLDEPSL GLAPIIIQQI
FDTIEQLREQ GMTIFLVEQN ANQALKLADR GYVLENGHVV LSDTGDALLA NEAVRSAYLG G
Length

241

Mol. Wt

26.863 kDa

pI

6.5 (calculated)

Extinction coefficient

16,960 - 17,085 (calc based on 4 Y, 2 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=livF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:LIVF-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P22731

UniProt (EcoliWiki Page)

UniProt:P22731

PFAM (EcoliWiki Page)

PFAM:PF00005

RefSeq (EcoliWiki Page)

RefSeq:NP_417911


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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