ghrA:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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YcdW  
YcdW  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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2-ketoacid reductase<ref name='LIB:Riley_2006'/>, B1033<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GhrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
2-ketoacid reductase<ref name='LIB:Riley_2006'/>, B1033<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GhrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
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!align=left |Product description
!align=left {{table heading style}} |Product description
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G6539<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
G6539<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Glyoxylate/hydroxypyruvate reductase; activity higher on glyoxylate than hydroxypyruvate<ref name='LIB:EcoGene'/>
Glyoxylate/hydroxypyruvate reductase; activity higher on glyoxylate than hydroxypyruvate<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.79 1.1.1.79]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.79 1.1.1.79]<ref name='LIB:Riley_2006'/>
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="Q46aa529d80d87"  class=" tableEdit GO_table_product dataTable"   
{|  id="Q46aa529d80d87"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-  
|-  
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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
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{|  id="I46aa529f663a5"  class=" tableEdit Product_interactions_table"   
{|  id="I46aa529f663a5"  class=" tableEdit Product_interactions_table dataTable"   
|-
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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****************************************************************************************** -->{{Product_localization_help}}
****************************************************************************************** -->{{Product_localization_help}}
{|  id="I46a7e4e26a4a9"  class=" tableEdit Product_localization_table"   
{|  id="I46a7e4e26a4a9"  class=" tableEdit Product_localization_table"   
|-
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6539-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6539-MONOMER at EcoCyc]  
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YISRTIAQLE KGERVCGQVD RARGY</pre>  
YISRTIAQLE KGERVCGQVD RARGY</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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325
325
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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36.837 kDa
36.837 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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7.3 (calculated)
7.3 (calculated)
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|-
!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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66,920 - 67,295 (calc based on 8 Y, 10 W, and 3 C residues)
66,920 - 67,295 (calc based on 8 Y, 10 W, and 3 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="B46aa52a187c54"  class=" tableEdit Product_motif_table"   
{|  id="B46aa52a187c54"  class=" tableEdit Product_motif_table dataTable"   
|-
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="H46aa52a231df1"  class=" tableEdit Product_resource_table"   
{|  id="H46aa52a231df1"  class=" tableEdit Product_resource_table"   
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|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
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{|  id="P46aa52a27ee37"  class=" tableEdit Gene_accessions_table"   
{|  id="P46aa52a27ee37"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="A46a7e4e7eace6"  class=" tableEdit Links_table"   
{|  id="A46a7e4e7eace6"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:57, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YcdW

Synonyms

2-ketoacid reductase[1], B1033[2][1], GhrA[2][1], YcdW[2][1]

Product description

G6539[2][3]

Glyoxylate/hydroxypyruvate reductase; activity higher on glyoxylate than hydroxypyruvate[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016491

oxidoreductase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc [5]

complete

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006140

F

Seeded from EcoCyc [5]

complete

GO:0048037

cofactor binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006140

F

Seeded from EcoCyc [5]

complete

GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc [5]

complete

GO:0005488

binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

F

Seeded from EcoCyc [5]

complete

GO:0005886

plasma membrane

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01666

C

Seeded from EcoCyc [5]

complete

GO:0008152

metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

P

Seeded from EcoCyc [5]

complete

GO:0016618

hydroxypyruvate reductase activity

GO_REF:0000020
GO_REF:0000003

IEA: Inferred from Electronic Annotation

HAMAP:MF_01666
EC:1.1.1.81

F

Seeded from EcoCyc [5]

complete

GO:0030267

glyoxylate reductase (NADP) activity

GO_REF:0000020
GO_REF:0000003

IEA: Inferred from Electronic Annotation

HAMAP:MF_01666
EC:1.1.1.79

F

Seeded from EcoCyc [5]

complete

GO:0055114

oxidation reduction

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc [5]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MRINFAQRFS GVSMDIIFYH PTFDTQWWIE ALRKAIPQAR VRAWKSGDND SADYALVWHP
PVEMLAGRDL KAVFALGAGV DSILSKLQAH PEMLNPSVPL FRLEDTGMGE QMQEYAVSQV
LHWFRRFDDY RIQQNSSHWQ PLPEYHREDF TIGILGAGVL GSKVAQSLQT WRFPLRCWSR
TRKSWPGVQS FAGREELSAF LSQCRVLINL LPNTPETVGI INQQLLEKLP DGAYLLNLAR
GVHVVEDDLL AALDSGKVKG AMLDVFNREP LPPESPLWQH PRVTITPHVA AITRPAEAVE
YISRTIAQLE KGERVCGQVD RARGY
Length

325

Mol. Wt

36.837 kDa

pI

7.3 (calculated)

Extinction coefficient

66,920 - 67,295 (calc based on 8 Y, 10 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ghrA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6539-MONOMER

UniProt (EcoliWiki Page)

UniProt:P75913

PFAM (EcoliWiki Page)

PFAM:PF02826

RefSeq (EcoliWiki Page)

RefSeq:NP_415551


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70

Categories

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