fkpB:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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FkpB  
FkpB  
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|-
!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)<ref name='LIB:Riley_2006'/>, B0028<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FkpB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SlpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)<ref name='LIB:Riley_2006'/>, B0028<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FkpB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SlpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
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!align=left |Product description
!align=left {{table heading style}} |Product description
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EG11080<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
EG11080<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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FKBP-type peptidyl-prolyl cis-trans isomerase<ref name='LIB:EcoGene'/>
FKBP-type peptidyl-prolyl cis-trans isomerase<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8]<ref name='LIB:Riley_2006'/>
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="F46aa164f00b2d"  class=" tableEdit GO_table_product dataTable"   
{|  id="F46aa164f00b2d"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
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{|  id="R46aa1659be945"  class=" tableEdit Product_interactions_table"   
{|  id="R46aa1659be945"  class=" tableEdit Product_interactions_table dataTable"   
|-
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-  
|-  
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****************************************************************************************** -->{{Product_localization_help}}
****************************************************************************************** -->{{Product_localization_help}}
{|  id="C46a72c36512bd"  class=" tableEdit Product_localization_table"   
{|  id="C46a72c36512bd"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG11080-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG11080-MONOMER at EcoCyc]  
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ITVDFNHPLA GQTVHFDIEV LEIDPALEA</pre>  
ITVDFNHPLA GQTVHFDIEV LEIDPALEA</pre>  
|-
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!align=left |Length
!align=left {{table heading style}} |Length
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149
149
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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16.08 kDa
16.08 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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4.2 (calculated)
4.2 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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1,490 (calc based on 1 Y,  W, and  C residues)
1,490 (calc based on 1 Y,  W, and  C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="K46aa165bd118c"  class=" tableEdit Product_motif_table"   
{|  id="K46aa165bd118c"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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Removed
Removed
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[http://www.uniprot.org/uniprot/P0AEM0#section_features UniProt:P0AEM0]  
[http://www.uniprot.org/uniprot/P0AEM0#section_features UniProt:P0AEM0]
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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19479.K46aa165bd118c&page=19479&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="H46aa165c6f475"  class=" tableEdit Product_resource_table"   
{|  id="H46aa165c6f475"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="J46aa165cb80c6"  class=" tableEdit Gene_accessions_table"   
{|  id="J46aa165cb80c6"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="A46a72c3a3f230"  class=" tableEdit Links_table"   
{|  id="A46a72c3a3f230"  class=" tableEdit Links_table"   
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|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:52, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FkpB

Synonyms

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[1], B0028[2][1], YaaD[2][1], FkpB[2][1], SlpA[2][1]

Product description

EG11080[2][3]

FKBP-type peptidyl-prolyl cis-trans isomerase[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016853

isomerase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc [5]

complete

GO:0006457

protein folding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001179
SP_KW:KW-0697

P

Seeded from EcoCyc [5]

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GO_REF:0000003
GO_REF:0000004

IEA: Inferred from Electronic Annotation

EC:5.2.1.8
SP_KW:KW-0697

F

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsI

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rplS

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

mreB

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

cheA

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rpsD

PMID:16606699[6]

Experiment(s):EBI-1135340, EBI-1135340

Protein

hybE

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rpsB

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rpsN

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

ileS

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rpoB

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

slyD

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

fliC

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rplO

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

gltB

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rpsJ

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rplN

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rplB

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

dnaJ

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

pdxA

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

greA

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rplQ

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

ydcP

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

nrdI

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rpoC

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

dnaK

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rplC

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

sdhA

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rpsL

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

rpsC

PMID:16606699[6]

Experiment(s):EBI-1135340

Protein

glpD

PMID:16606699[6]

Experiment(s):EBI-1135340
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MSESVQSNSA VLVHFTLKLD DGTTAESTRN NGKPALFRLG DASLSEGLEQ HLLGLKVGDK
TTFSLEPDAA FGVPSPDLIQ YFSRREFMDA GEPEIGAIML FTAMDGSEMP GVIREINGDS
ITVDFNHPLA GQTVHFDIEV LEIDPALEA
Length

149

Mol. Wt

16.08 kDa

pI

4.2 (calculated)

Extinction coefficient

1,490 (calc based on 1 Y, W, and C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0AEM0


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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fkpB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11080-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AEM0

PFAM (EcoliWiki Page)

PFAM:PF00254

RefSeq (EcoliWiki Page)

RefSeq:NP_414569


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 6.24 6.25 6.26 6.27 6.28 6.29 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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