fiu:Gene Product(s): Difference between revisions

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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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Fiu  
Fiu  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted iron outer membrane transporter<ref name='LIB:Riley_2006'/>, B0805<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fiu<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbiL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted iron outer membrane transporter<ref name='LIB:Riley_2006'/>, B0805<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fiu<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbiL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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putative outer membrane receptor for iron transport<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
putative outer membrane receptor for iron transport<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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TonB-dependent ferric iron outer membrane transporter; siderophore receptor for ferri-dihydroxybenzoylserine, ferri-dihydroxybenzoate and other catecholate siderophores; surface receptor for colicins G, H, and E492<ref name='LIB:EcoGene'/>
TonB-dependent ferric iron outer membrane transporter; siderophore receptor for ferri-dihydroxybenzoylserine, ferri-dihydroxybenzoate and other catecholate siderophores; surface receptor for colicins G, H, and E492<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="U46aa44f57fae7"  class=" tableEdit GO_table_product dataTable"   
{|  id="U46aa44f57fae7"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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{|  id="S46aa44fb0179b"  class=" tableEdit Product_interactions_table"   
{|  id="S46aa44fb0179b"  class=" tableEdit Product_interactions_table dataTable"   
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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{|  id="J46aa44fba83cc"  class=" tableEdit Product_localization_table"   
{|  id="J46aa44fba83cc"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes
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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6414-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6414-MONOMER at EcoCyc]  
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FQLNVYNLFD TDYVASINKS GYRYHPGEPR TFLLTANMHF</pre>  
FQLNVYNLFD TDYVASINKS GYRYHPGEPR TFLLTANMHF</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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760
760
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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81.96 kDa
81.96 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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5.8 (calculated)
5.8 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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98,670 - 99,045 (calc based on 33 Y, 9 W, and 3 C residues)
98,670 - 99,045 (calc based on 33 Y, 9 W, and 3 C residues)
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{|  id="S46aa44fd79670"  class=" tableEdit Product_motif_table"   
{|  id="S46aa44fd79670"  class=" tableEdit Product_motif_table dataTable"   
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!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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[[uniprotmanual:signal|UniProt Manual:Signal Peptides]]
[[uniprotmanual:signal|UniProt Manual:Signal Peptides]]
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[http://www.uniprot.org/uniprot/P75780#section_features UniProt:P75780]  
[http://www.uniprot.org/uniprot/P75780#section_features UniProt:P75780]
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<!--box uid=421aa90e079fa326b6494f812ad13e79.21408.S46aa44fd79670--></td>
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!align=left |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
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{|  id="A46aa44fe1d38e"  class=" tableEdit Product_resource_table"   
{|  id="A46aa44fe1d38e"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="Y46aa44fe68c4e"  class=" tableEdit Gene_accessions_table"   
{|  id="Y46aa44fe68c4e"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="U46a7d6c3b09d6"  class=" tableEdit Links_table"   
{|  id="U46a7d6c3b09d6"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:52, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Fiu

Synonyms

predicted iron outer membrane transporter[1], B0805[2][1], Fiu[2][1], YbiL[2][1]

Product description

putative outer membrane receptor for iron transport[2][3]

TonB-dependent ferric iron outer membrane transporter; siderophore receptor for ferri-dihydroxybenzoylserine, ferri-dihydroxybenzoate and other catecholate siderophores; surface receptor for colicins G, H, and E492[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0019867

outer membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0557

C

Seeded from EcoCyc 12.5 [5]

complete

GO:0016020

membrane

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000531
InterPro:IPR012910
SP_KW:KW-0472

C

Seeded from EcoCyc [6]

complete

GO:0015891

siderophore transport

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010105

P

Seeded from EcoCyc [6]

complete

GO:0015343

siderophore-iron transmembrane transporter activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010105

F

Seeded from EcoCyc [6]

complete

GO:0006826

iron ion transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0410

P

Seeded from EcoCyc [6]

complete

GO:0006811

ion transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0406

P

Seeded from EcoCyc [6]

complete

GO:0006810

transport

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000531
InterPro:IPR012910
SP_KW:KW-0813

P

Seeded from EcoCyc [6]

complete

GO:0005506

iron ion binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR010105
SP_KW:KW-0408

F

Seeded from EcoCyc [6]

complete

GO:0005215

transporter activity

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000531
InterPro:IPR012910

F

Seeded from EcoCyc [6]

complete

GO:0004872

receptor activity

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000531
InterPro:IPR010105
InterPro:IPR012910
SP_KW:KW-0675

F

Seeded from EcoCyc [6]

complete

GO:0005886

plasma membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc [6]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ydcP

PMID:16606699[7]

Experiment(s):EBI-1138072

Protein

yjdA

PMID:16606699[7]

Experiment(s):EBI-1138072

Protein

helD

PMID:16606699[7]

Experiment(s):EBI-1138072
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

outer membrane

From EcoCyc[3]

Outer Membrane

PMID:10806384

EchoLocation:fiu


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MENNRNFPAR QFHSLTFFAG LCIGITPVAQ ALAAEGQTNA DDTLVVEAST PSLYAPQQSA
DPKFSRPVAD TTRTMTVISE QVIKDQGATN LTDALKNVPG VGAFFAGENG NSTTGDAIYM
RGADTSNSIY IDGIRDIGSV SRDTFNTEQV EVIKGPSGTD YGRSAPTGSI NMISKQPRND
SGIDASASIG SAWFRRGTLD VNQVIGDTTA VRLNVMGEKT HDAGRDKVKN ERYGVAPSVA
FGLGTANRLY LNYLHVTQHN TPDGGIPTIG LPGYSAPSAG TAALNHSGKV DTHNFYGTDS
DYDDSTTDTA TMRFEHDIND NTTIRNTTRW SRVKQDYLMT AIMGGASNIT QPTSDVNSWT
WSRTANTKDV SNKILTNQTN LTSTFYTGSI GHDVSTGVEF TRETQTNYGV NPVTLPAVNI
YHPDSSIHPG GLTRNGANAN GQTDTFAIYA FDTLQITRDF ELNGGIRLDN YHTEYDSATA
CGGSGRGAIT CPTGVAKGSP VTTVDTAKSG NLMNWKAGAL YHLTENGNVY INYAVSQQPP
GGNNFALAQS GSGNSANRTD FKPQKANTSE IGTKWQVLDK RLLLTAALFR TDIENEVEQN
DDGTYSQYGK KRVEGYEISV AGNITPAWQV IGGYTQQKAT IKNGKDVAQD GSSSLPYTPE
HAFTLWSQYQ ATDDISVGAG ARYIGSMHKG SDGAVGTPAF TEGYWVADAK LGYRVNRNLD
FQLNVYNLFD TDYVASINKS GYRYHPGEPR TFLLTANMHF
Length

760

Mol. Wt

81.96 kDa

pI

5.8 (calculated)

Extinction coefficient

98,670 - 99,045 (calc based on 33 Y, 9 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-31

UniProt Manual:Signal Peptides

UniProt:P75780


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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fiu taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6414-MONOMER

UniProt (EcoliWiki Page)

UniProt:P75780

PFAM (EcoliWiki Page)

PFAM:PF07715

RefSeq (EcoliWiki Page)

RefSeq:NP_415326


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  7. ↑ 7.0 7.1 7.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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