eptA:Gene Product(s): Difference between revisions

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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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EptA product  
EptA product  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted metal dependent hydrolase product<ref name='LIB:Riley_2006'/>, B4114 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjdB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EptA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted metal dependent hydrolase product<ref name='LIB:Riley_2006'/>, B4114 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjdB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EptA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
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!align=left |Product description
!align=left {{table heading style}} |Product description
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predicted metal-dependent hydrolase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted metal-dependent hydrolase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Lipid A phosphoethanolamine transferase, associated with polymyxin resistance<ref name='LIB:EcoGene'/>
Lipid A phosphoethanolamine transferase, associated with polymyxin resistance<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
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{|  id="A46ab1da0f3cb2"  class=" tableEdit GO_table_product dataTable"   
{|  id="A46ab1da0f3cb2"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
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{|  id="T46ab1da18bf39"  class=" tableEdit Product_interactions_table"   
{|  id="T46ab1da18bf39"  class=" tableEdit Product_interactions_table dataTable"   
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|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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****************************************************************************************** -->{{Product_localization_help}}
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{|  id="C46ab1da263e05"  class=" tableEdit Product_localization_table"   
{|  id="C46ab1da263e05"  class=" tableEdit Product_localization_table"   
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|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes
|-  
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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG11613-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG11613-MONOMER at EcoCyc]  
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YYQAADDILQ TCRRVSE</pre>  
YYQAADDILQ TCRRVSE</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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557
557
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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62.803 kDa
62.803 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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6.8 (calculated)
6.8 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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77,240 - 78,865 (calc based on 26 Y, 7 W, and 13 C residues)
77,240 - 78,865 (calc based on 26 Y, 7 W, and 13 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="E46ab1da49669c"  class=" tableEdit Product_motif_table"   
{|  id="E46ab1da49669c"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="R46ab1da56fde2"  class=" tableEdit Product_resource_table"   
{|  id="R46ab1da56fde2"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="H46ab1da5d668e"  class=" tableEdit Gene_accessions_table"   
{|  id="H46ab1da5d668e"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="B46ab1da98307a"  class=" tableEdit Links_table"   
{|  id="B46ab1da98307a"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:48, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

EptA product

Synonyms

predicted metal dependent hydrolase product[1], B4114 product[2][1], YjdB product[2][1], EptA product[2][1]

Product description

predicted metal-dependent hydrolase[2][3]

Lipid A phosphoethanolamine transferase, associated with polymyxin resistance[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016021

integral to membrane

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR012549
SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0008484

sulfuric ester hydrolase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000917

F

Seeded from EcoCyc [5]

complete

GO:0008152

metabolic process

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000917
InterPro:IPR001952

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0003824

catalytic activity

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017849
InterPro:IPR017850

F

Seeded from EcoCyc [5]

complete

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

plasma membrane


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MRTLFDGNTV MLKRLLKRPS LNLLAWLLLA AFYISICLNI AFFKQVLQAL PLDSLHNVLV
FLSMPVVAFS VINIVLTLSS FLWLNRPLAC LFILVGAAAQ YFIMTYGIVI DRSMIANIID
TTPAESYALM TPQMLLTLGF SGVLAALIAC WIKIKPATSR LRSVLFRGAN ILVSVLLILL
VAALFYKDYA SLFRNNKELV KSLSPSNSIV ASWSWYSHQR LANLPLVRIG EDAHRNPLMQ
NEKRKNLTIL IVGETSRAEN FSLNGYPRET NPRLAKDNVV YFPNTASCGT ATAVSVPCMF
SDMPREHYKE ELAQHQEGVL DIIQRAGINV LWNDNDGGCK GACDRVPHQN VTALNLPDQC
INGECYDEVL FHGLEEYINN LQGDGVIVLH TIGSHGPTYY NRYPPQFRKF TPTCDTNEIQ
TCTKEQLVNT YDNTLVYVDY IVDKAINLLK EHQDKFTTSL VYLSDHGESL GENGIYLHGL
PYAIAPDSQK QVPMLLWLSE DYQKRYQVDQ NCLQKQAQTQ HYSQDNLFST LLGLTGVETK
YYQAADDILQ TCRRVSE
Length

557

Mol. Wt

62.803 kDa

pI

6.8 (calculated)

Extinction coefficient

77,240 - 78,865 (calc based on 26 Y, 7 W, and 13 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

tmhmm.php?gene=eptA&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=eptA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11613-MONOMER

UniProt (EcoliWiki Page)

UniProt:P30845

PFAM (EcoliWiki Page)

PFAM:PF00884

RefSeq (EcoliWiki Page)

RefSeq:NP_418538


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

Categories

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