ebgC:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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EbgC  
EbgC  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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cryptic beta-D-galactosidase, beta subunit<ref name='LIB:Riley_2006'/>, B3077<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EbgC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
cryptic beta-D-galactosidase, beta subunit<ref name='LIB:Riley_2006'/>, B3077<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EbgC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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evolved &beta;-D-galactosidase, &beta; subunit; cryptic gene<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
evolved &beta;-D-galactosidase, &beta; subunit; cryptic gene<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Evolved beta-galactosidase, beta subunit; normal substrate and function unknown; alpha(4)beta(4) holoenzyme<ref name='LIB:EcoGene'/>
Evolved beta-galactosidase, beta subunit; normal substrate and function unknown; alpha(4)beta(4) holoenzyme<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
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{|  id="Y46aad079c9968"  class=" tableEdit GO_table_product dataTable"   
{|  id="Y46aad079c9968"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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*  
*  
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{|  id="C46aad07d121c2"  class=" tableEdit Product_interactions_table"   
{|  id="C46aad07d121c2"  class=" tableEdit Product_interactions_table dataTable"   
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|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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{|  id="N46a864bbd0bda"  class=" tableEdit Product_localization_table"   
{|  id="N46a864bbd0bda"  class=" tableEdit Product_localization_table"   
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|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG10253-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG10253-MONOMER at EcoCyc]  
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HEAYRFICNN AVKKVVLKVT IEDGYFHNK</pre>  
HEAYRFICNN AVKKVVLKVT IEDGYFHNK</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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149
149
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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17.455 kDa
17.455 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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5.7 (calculated)
5.7 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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21,890 - 22,390 (calc based on 11 Y, 1 W, and 4 C residues)
21,890 - 22,390 (calc based on 11 Y, 1 W, and 4 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="A46aad07fe2d53"  class=" tableEdit Product_motif_table"   
{|  id="A46aad07fe2d53"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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{|  id="W46aad080afa66"  class=" tableEdit Product_resource_table"   
{|  id="W46aad080afa66"  class=" tableEdit Product_resource_table"   
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|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="F46aad0811b913"  class=" tableEdit Gene_accessions_table"   
{|  id="F46aad0811b913"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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{|  id="G46a864c0ebff4"  class=" tableEdit Links_table"   
{|  id="G46a864c0ebff4"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:43, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

EbgC

Synonyms

cryptic beta-D-galactosidase, beta subunit[1], B3077[2][1], EbgC[2][1]

Product description

evolved β-D-galactosidase, β subunit; cryptic gene[2][3];

Component of evolved β-D-galactosidase[3]

Evolved beta-galactosidase, beta subunit; normal substrate and function unknown; alpha(4)beta(4) holoenzyme[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016052

carbohydrate catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of evolved β-D-galactosidase

could be indirect

Protein

kbl

PMID:16606699[5]

Experiment(s):EBI-1144759

Protein

rpoA

PMID:16606699[5]

Experiment(s):EBI-1144759

Protein

yefI

PMID:16606699[5]

Experiment(s):EBI-1144759

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1144759
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MRIIDNLEQF RQIYASGKKW QRCVEAIENI DNIQPGVAHS IGDSLTYRVE TDSATDALFT
GHRRYFEVHY YLQGQQKIEY APKETLQVVE YYRDETDREY LKGCGETVEV HEGQIVICDI
HEAYRFICNN AVKKVVLKVT IEDGYFHNK
Length

149

Mol. Wt

17.455 kDa

pI

5.7 (calculated)

Extinction coefficient

21,890 - 22,390 (calc based on 11 Y, 1 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ebgC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10253-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AC73

PFAM (EcoliWiki Page)

PFAM:PF04074

RefSeq (EcoliWiki Page)

RefSeq:NP_417548


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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