ebgA:Gene Product(s): Difference between revisions

Standard name	EbgA
Synonyms	cryptic beta-D-galactosidase, alpha subunit^[1], B3076^[2]^[1], EbgA^[2]^[1]
Product description	evolved β-D-galactosidase, α subunit; cryptic gene^[2]^[3]; Component of evolved β-D-galactosidase^[3] Evolved beta-galactosidase, alpha subunit; normal substrate and function unknown; alpha(4)beta(4) holoenzyme^[4]
EC number (for enzymes)	3.2.1.23^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0004565	beta-galactosidase activity	GO_REF:0000002 GO_REF:0000003	IEA: Inferred from Electronic Annotation	InterPro:IPR004199 EC:3.2.1.23	F	Seeded from EcoCyc ^[5]	complete
	GO:0005975	carbohydrate metabolic process	GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004199 InterPro:IPR006101 InterPro:IPR006102 InterPro:IPR006103 InterPro:IPR006104 InterPro:IPR011013 InterPro:IPR013781 InterPro:IPR013812 InterPro:IPR014718	P	Seeded from EcoCyc ^[5]	complete
	GO:0008152	metabolic process	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0326	P	Seeded from EcoCyc ^[5]	complete
	GO:0009341	beta-galactosidase complex	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004199	C	Seeded from EcoCyc ^[5]	complete
	GO:0016787	hydrolase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc ^[5]	complete
	GO:0016798	hydrolase activity, acting on glycosyl bonds	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0326	F	Seeded from EcoCyc ^[5]	complete
	GO:0030246	carbohydrate binding	GO_REF:0000002 GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011013 InterPro:IPR014718	F	Seeded from EcoCyc ^[5]	complete
	GO:0043169	cation binding	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013781	F	Seeded from EcoCyc ^[5]	complete
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006101 InterPro:IPR006102 InterPro:IPR006103 InterPro:IPR006104 InterPro:IPR013812	F	Seeded from EcoCyc ^[5]	complete
	GO:0003824	catalytic activity	GO_REF:0000002 GO_REF:0000002 GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011013 InterPro:IPR013781 InterPro:IPR014718	F	Seeded from EcoCyc ^[5]	complete
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0016052	carbohydrate catabolic process				P	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of evolved β-D-galactosidase	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MNRWENIQLT HENRLAPRAY FFSYDSVAQA RTFARETSSL FLPLSGQWNF HFFDHPLQVP EAFTSELMAD WGHITVPAMW QMEGHGKLQY TDEGFPFPID VPFVPSDNPT GAYQRIFTLS DGWQGKQTLI KFDGVETYFE VYVNGQYVGF SKGSRLTAEF DISAMVKTGD NLLCVRVMQW ADSTYVEDQD MWWSAGIFRD VYLVGKHLTH INDFTVRTDF DEAYCDATLS CEVVLENLAA SPVVTTLEYT LFDGERVVHS SAIDHLAIEK LTSASFAFTV EQPQQWSAES PYLYHLVMTL KDANGNVLEV VPQRVGFRDI KVRDGLFWIN NRYVMLHGVN RHDNDHRKGR AVGMDRVEKD LQLMKQHNIN SVRTAHYPND PRFYELCDIY GLFVMAETDV ESHGFANVGD ISRITDDPQW EKVYVERIVR HIHAQKNHPS IIIWSLGNES GYGCNIRAMY HAAKALDDTR LVHYEEDRDA EVVDIISTMY TRVPLMNEFG EYPHPKPRII CEYAHAMGNG PGGLTEYQNV FYKHDCIQGH YVWEWCDHGI QAQDDHGNVW YKFGGDYGDY PNNYNFCLDG LIYSDQTPGP GLKEYKQVIA PVKIHARDLT RGELKVENKL WFTTLDDYTL HAEVRAEGET LATQQIKLRD VAPNSEAPLQ ITLPQLDARE AFLNITVTKD SRTRYSEAGH PIATYQFPLK ENTAQPVPFA PNNARPLTLE DDRLSCTVRG YNFAITFSKM SGKPTSWQVN GESLLTREPK INFFKPMIDN HKQEYEGLWQ PNHLQIMQEH LRDFAVEQSD GEVLIISRTV IAPPVFDFGM RCTYIWRIAA DGQVNVALSG ERYGDYPHII PCIGFTMGIN GEYDQVAYYG RGPGENYADS QQANIIDIWR STVDAMFENY PFPQNNGNRQ HVRWTALTNR HGNGLLVVPQ RPINFSAWHY TQENIHAAQH CNELQRSDDI TLNLDHQLLG LGSNSWGSEV LDSWRVWFRD FSYGFTLLPV SGGEATAQSL ASYEFGAGFF STNLHSENKQ
Length	1,030
Mol. Wt	117.878 kDa
pI	5.3 (calculated)
Extinction coefficient	210,510 - 212,135 (calc based on 49 Y, 25 W, and 13 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ebgA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG10252-MONOMER
UniProt (EcoliWiki Page)	UniProt:P06864
PFAM (EcoliWiki Page)	PFAM:PF02837
RefSeq (EcoliWiki Page)	RefSeq:YP_026199
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.00 ^5.01 ^5.02 ^5.03 ^5.04 ^5.05 ^5.06 ^5.07 ^5.08 ^5.09 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70

@@ Line 38: / Line 38: @@
 |-
-!align=left  |Standard name
+!align=left {{table heading style}} |Standard name
 ||
 EbgA
 |-
-!align=left  |Synonyms
+!align=left {{table heading style}} |Synonyms
 ||
 cryptic beta-D-galactosidase, alpha subunit<ref name='LIB:Riley_2006'/>, B3076<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EbgA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
 |-
-!align=left  |Product description
+!align=left {{table heading style}} |Product description
 ||
 evolved &beta;-D-galactosidase, &alpha; subunit; cryptic gene<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
@@ Line 54: / Line 54: @@
 Evolved beta-galactosidase, alpha subunit; normal substrate and function unknown; alpha(4)beta(4) holoenzyme<ref name='LIB:EcoGene'/>
 |-
-!align=left  |EC number (for enzymes)
+!align=left {{table heading style}} |EC number (for enzymes)
 ||
 * [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.23 3.2.1.23]<ref name='LIB:Riley_2006'/>
@@ Line 78: / Line 78: @@
 ****************************************************************************************** -->{{Product_GO_help}}
 {|   id="I46aad067b563d"  class=" tableEdit GO_table_product dataTable"
-|-
+|- {{table_heading_style}}
 !|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
@@ Line 322: / Line 322: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|   id="I46aad06fa9b03"  class=" tableEdit Product_interactions_table"
+{|   id="I46aad06fa9b03"  class=" tableEdit Product_interactions_table dataTable"
-|-
+|- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
 |-
@@ Line 355: / Line 355: @@
 ****************************************************************************************** -->{{Product_localization_help}}
 {|   id="B46a864b124b8a"  class=" tableEdit Product_localization_table"
-|-
+|- {{table heading style}}
 !|Compartment!!Description!!Evidence!!Source!!Notes
@@ Line 382: / Line 382: @@
 |-
-!align=left  |Sequence
+!align=left {{table heading style}} |Sequence
 ||
 [http://biocyc.org/ECOLI/sequence-aa?object=EG10252-MONOMER at EcoCyc]
@@ Line 404: / Line 404: @@
 STNLHSENKQ</pre>
 |-
-!align=left  |Length
+!align=left {{table heading style}} |Length
 ||
 ,030
 |-
-!align=left  |Mol. Wt
+!align=left {{table heading style}} |Mol. Wt
 ||
 .878 kDa
 |-
-!align=left  |pI
+!align=left {{table heading style}} |pI
 ||
 .3 (calculated)
 |-
-!align=left  |Extinction coefficient
+!align=left {{table heading style}} |Extinction coefficient
 ||
 ,510 - 212,135 (calc based on 49 Y, 25 W, and 13 C residues)
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 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|   id="J46aad072855dc"  class=" tableEdit Product_motif_table"
+{|   id="J46aad072855dc"  class=" tableEdit Product_motif_table dataTable"
-|-
+|- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
 |- class="tableEdit_footer"
-|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26576.J46aad072855dc&page=26576&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26576.J46aad072855dc&page=26576&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26576.J46aad072855dc--></td>
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 |-
-!align=left  |Structures
+!align=left {{table heading style}} |Structures
 ||
 <beststructure>
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 </beststructure>
 |-
-!align=left  |Models
+!align=left {{table heading style}} |Models
 ||
 View models at:
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 ****************************************************************************************** -->{{Product_resources_help}}
 {|   id="Q46aad073519dd"  class=" tableEdit Product_resource_table"
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+|- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
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 ****************************************************************************************** -->{{Gene_accessions_help}}
 {|   id="C46aad073b1394"  class=" tableEdit Gene_accessions_table"
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 !|Database!!Accession!!Notes
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 ****************************************************************************************** -->
 {|   id="Y46a864b63d9d6"  class=" tableEdit Links_table"
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+|- {{table_heading_style}}
 !|Name!!URL!!Comments

ebgA:Gene Product(s): Difference between revisions

Revision as of 19:43, 23 February 2010

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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ebgA:Gene Product(s): Difference between revisions

Revision as of 19:43, 23 February 2010

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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