cho:Gene Product(s): Difference between revisions

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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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Cho
Cho
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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endonuclease of nucleotide excision repair<ref name='LIB:Riley_2006'/>, YdjQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cho<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1741<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
endonuclease of nucleotide excision repair<ref name='LIB:Riley_2006'/>, YdjQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cho<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1741<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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endonuclease of nucleotide excision repair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
endonuclease of nucleotide excision repair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Endonuclease involved in excision repair, cuts 3' of lesion; requires UvrAB<ref name='LIB:EcoGene'/>
Endonuclease involved in excision repair, cuts 3' of lesion; requires UvrAB<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.25.- 3.1.25.-]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.25.- 3.1.25.-]<ref name='LIB:Riley_2006'/>
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="I46aa7b3cf0ab3"  class=" tableEdit GO_table_product dataTable"   
{|  id="I46aa7b3cf0ab3"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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{|  id="E46aa7b4e6a9dd"  class=" tableEdit Product_interactions_table"   
{|  id="E46aa7b4e6a9dd"  class=" tableEdit Product_interactions_table dataTable"   
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|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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{|  id="D46a80c8a77f3c"  class=" tableEdit Product_localization_table"   
{|  id="D46a80c8a77f3c"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6937-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6937-MONOMER at EcoCyc]  
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NWLWLGAVNS LEEATTLIRT PAGFDHDGYK ILCKPLLSGN YEITELDPAN DQRAS</pre>  
NWLWLGAVNS LEEATTLIRT PAGFDHDGYK ILCKPLLSGN YEITELDPAN DQRAS</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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295
295
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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33.739 kDa
33.739 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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9.0 (calculated)
9.0 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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40,910 - 42,035 (calc based on 9 Y, 5 W, and 9 C residues)
40,910 - 42,035 (calc based on 9 Y, 5 W, and 9 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
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{|  id="Q46aa7b50f2b4b"  class=" tableEdit Product_motif_table"   
{|  id="Q46aa7b50f2b4b"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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!align=left |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
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{|  id="Z46aa7b51c4c04"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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{|  id="R46aa7b5231af9"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
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{|  id="J46a80c8f9e906"  class=" tableEdit Links_table"   
{|  id="J46a80c8f9e906"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:32, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Cho

Synonyms

endonuclease of nucleotide excision repair[1], YdjQ[2][1], Cho[2][1], B1741[2][1]

Product description

endonuclease of nucleotide excision repair[2][3]

Endonuclease involved in excision repair, cuts 3' of lesion; requires UvrAB[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006974

response to DNA damage stimulus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc [5]

complete

GO:0006281

DNA repair

GO_REF:0000002
GO_REF:0000004
GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000305
SP_KW:KW-0228
SP_KW:KW-0234
SP_KW:KW-0742

P

Seeded from EcoCyc [5]

complete

GO:0005622

intracellular

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000305

C

Seeded from EcoCyc [5]

complete

GO:0004518

nuclease activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000305
SP_KW:KW-0267

F

Seeded from EcoCyc [5]

complete

GO:0009432

SOS response

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0742

P

Seeded from EcoCyc [5]

complete

GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc [5]

complete

GO:0005515

protein binding

PMID:15690043[6]

IPI: Inferred from Physical Interaction

UniProtKB:P0A6F5

F

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0006950

response to stress

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006974

response to DNA damage stimulus

PMID:10760155[7]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:15690043[6]

Experiment(s):EBI-883032

Protein

rplQ

PMID:16606699[8]

Experiment(s):EBI-1140667

Protein

dnaK

PMID:16606699[8]

Experiment(s):EBI-1140667

Protein

rpsI

PMID:16606699[8]

Experiment(s):EBI-1140667

Protein

groL

PMID:16606699[8]

Experiment(s):EBI-1140667

Protein

uspG

PMID:16606699[8]

Experiment(s):EBI-1140667
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MVRRLTSPRL EFEAAAIYEY PEHLRSFLND LPTRPGVYLF HGESDTMPLY IGKSVNIRSR
VLSHLRTPDE AAMLRQSRRI SWICTAGEIG ALLLEARLIK EQQPLFNKRL RRNRQLCALQ
LNEKRVDVVY AKEVDFSRAP NLFGLFANRR AALQALQTIA DEQKLCYGLL GLEPLSRGRA
CFRSALKRCA GACCGKESHE EHALRLRQSL ERLRVVCWPW QGAVALKEQH PEMTQYHIIQ
NWLWLGAVNS LEEATTLIRT PAGFDHDGYK ILCKPLLSGN YEITELDPAN DQRAS
Length

295

Mol. Wt

33.739 kDa

pI

9.0 (calculated)

Extinction coefficient

40,910 - 42,035 (calc based on 9 Y, 5 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=cho taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6937-MONOMER

UniProt (EcoliWiki Page)

UniProt:P76213

PFAM (EcoliWiki Page)

PFAM:PF01541

RefSeq (EcoliWiki Page)

RefSeq:NP_416255


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ Fernández De Henestrosa, AR et al. (2000) Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol. Microbiol. 35 1560-72 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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