cca:Gene Product(s): Difference between revisions

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|-
|-
!align=left |Standard name
!align=left {{table heading style}} |Standard name
||
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Cca  
Cca  
|-
|-
!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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fused tRNA nucleotidyl transferase<ref name='LIB:Riley_2006'/>, 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase<ref name='LIB:Riley_2006'/>, B3056<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cca<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
fused tRNA nucleotidyl transferase<ref name='LIB:Riley_2006'/>, 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase<ref name='LIB:Riley_2006'/>, B3056<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cca<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!align=left |Product description
!align=left {{table heading style}} |Product description
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tRNA nucleotidyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
tRNA nucleotidyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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tRNA nucleotidyltransferase, repairs terminal CCA of tRNAs<ref name='LIB:EcoGene'/>
tRNA nucleotidyltransferase, repairs terminal CCA of tRNAs<ref name='LIB:EcoGene'/>
|-
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.25 2.7.7.25]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.25 2.7.7.25]<ref name='LIB:Riley_2006'/>
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****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="W46aacef181080"  class=" tableEdit GO_table_product dataTable"   
{|  id="W46aacef181080"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
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{|  id="A46aacefdb8027"  class=" tableEdit Product_interactions_table"   
{|  id="A46aacefdb8027"  class=" tableEdit Product_interactions_table dataTable"   
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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{|  id="T46a86377163ab"  class=" tableEdit Product_localization_table"   
{|  id="T46a86377163ab"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG10136-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG10136-MONOMER at EcoCyc]  
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RWLREAWEVA QSVPTKAVVE AGFKGVEIRE ELTRRRIAAV ASWKEQRCPK PE</pre>  
RWLREAWEVA QSVPTKAVVE AGFKGVEIRE ELTRRRIAAV ASWKEQRCPK PE</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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412
412
|-
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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46.466 kDa
46.466 kDa
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|-
!align=left |pI
!align=left {{table heading style}} |pI
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6.6 (calculated)
6.6 (calculated)
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|-
!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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55,920 - 56,545 (calc based on 8 Y, 8 W, and 5 C residues)
55,920 - 56,545 (calc based on 8 Y, 8 W, and 5 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
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{|  id="Z46aacf00228ab"  class=" tableEdit Product_motif_table"   
{|  id="Z46aacf00228ab"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.Z46aacf00228ab&page=26530&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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****************************************************************************************** -->{{Product_resources_help}}
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{|  id="E46aacf00e2c4e"  class=" tableEdit Product_resource_table"   
{|  id="E46aacf00e2c4e"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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{|  id="X46aacf014ea41"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:31, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Cca

Synonyms

fused tRNA nucleotidyl transferase[1], 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase[1], B3056[2][1], Cca[2][1]

Product description

tRNA nucleotidyltransferase[2][3]

tRNA nucleotidyltransferase, repairs terminal CCA of tRNAs[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016791

phosphatase activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01261

F

Seeded from EcoCyc [5]

complete

GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc [5]

complete

GO:0016779

nucleotidyltransferase activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR002646
SP_KW:KW-0548

F

Seeded from EcoCyc [5]

complete

GO:0016740

transferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc [5]

complete

GO:0016437

tRNA cytidylyltransferase activity

GO_REF:0000003
GO_REF:0000020

IEA: Inferred from Electronic Annotation

EC:2.7.7.21
HAMAP:MF_01261

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0016151

nickel ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0533

F

Seeded from EcoCyc [5]

complete

GO:0006396

RNA processing

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002646

P

Seeded from EcoCyc [5]

complete

GO:0008033

tRNA processing

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0819

P

Seeded from EcoCyc [5]

complete

GO:0005524

ATP binding

GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR012006
SP_KW:KW-0067
HAMAP:MF_01261

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0004810

tRNA adenylyltransferase activity

GO_REF:0000002
GO_REF:0000003
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR012006
EC:2.7.7.25
HAMAP:MF_01261

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0004112

cyclic-nucleotide phosphodiesterase activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01261

F

Seeded from EcoCyc [5]

complete

GO:0003824

catalytic activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR003607
SP_KW:KW-0511

F

Seeded from EcoCyc [5]

complete

GO:0003723

RNA binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR002646
InterPro:IPR012006
SP_KW:KW-0694

F

Seeded from EcoCyc [5]

complete

GO:0000049

tRNA binding

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01261

F

Seeded from EcoCyc [5]

complete

GO:0000166

nucleotide binding

GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547
HAMAP:MF_01261

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0000287

magnesium ion binding

GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460
HAMAP:MF_01261

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0001680

tRNA 3'-terminal CCA addition

GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR012006
HAMAP:MF_01261

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0042245

RNA repair

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0692

P

Seeded from EcoCyc [5]

complete

GO:0046872

metal ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc [5]

complete

GO:0005515

protein binding

PMID:15690043[7]

IPI: Inferred from Physical Interaction

UniProtKB:P0A6M4

F

Seeded from EcoCyc [5]

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009451

RNA modification

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

pflB

PMID:15690043[7]

Experiment(s):EBI-888051

Protein

rplC

PMID:15690043[7]

Experiment(s):EBI-888051

Protein

rpsB

PMID:15690043[7]

Experiment(s):EBI-888051

Protein

tufA

PMID:15690043[7]

Experiment(s):EBI-888051

Protein

rplB

PMID:16606699[8]

Experiment(s):EBI-1144661

Protein

nadE

PMID:16606699[8]

Experiment(s):EBI-1144661

Protein

mukE

PMID:16606699[8]

Experiment(s):EBI-1144661

Protein

rplQ

PMID:16606699[8]

Experiment(s):EBI-1144661

Protein

htrE

PMID:16606699[8]

Experiment(s):EBI-1144661

Protein

rpsI

PMID:16606699[8]

Experiment(s):EBI-1144661

Protein

ygjK

PMID:16606699[8]

Experiment(s):EBI-1144661
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MKIYLVGGAV RDALLGLPVK DRDWVVVGST PQEMLDAGYQ QVGRDFPVFL HPQTHEEYAL
ARTERKSGSG YTGFTCYAAP DVTLEDDLKR RDLTINALAQ DDNGEIIDPY NGLGDLQNRL
LRHVSPAFGE DPLRVLRVAR FAARYAHLGF RIADETLALM REMTHAGELE HLTPERVWKE
TESALTTRNP QVFFQVLRDC GALRVLFPEI DALFGVPAPA KWHPEIDTGI HTLMTLSMAA
MLSPQVDVRF ATLCHDLGKG LTPPELWPRH HGHGPAGVKL VEQLCQRLRV PNEIRDLARL
VAEFHDLIHT FPMLNPKTIV KLFDSIDAWR KPQRVEQLAL TSEADVRGRT GFESADYPQG
RWLREAWEVA QSVPTKAVVE AGFKGVEIRE ELTRRRIAAV ASWKEQRCPK PE
Length

412

Mol. Wt

46.466 kDa

pI

6.6 (calculated)

Extinction coefficient

55,920 - 56,545 (calc based on 8 Y, 8 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=cca taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10136-MONOMER

UniProt (EcoliWiki Page)

UniProt:P06961

PFAM (EcoliWiki Page)

PFAM:PF01743

RefSeq (EcoliWiki Page)

RefSeq:NP_417528


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 8.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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