amiD:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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AmiD
AmiD
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted amidase and lipoprotein<ref name='LIB:Riley_2006'/>, YbjR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0867<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted amidase and lipoprotein<ref name='LIB:Riley_2006'/>, YbjR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0867<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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predicted amidase and lipoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted amidase and lipoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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*
*
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****************************************************************************************** -->{{Product_GO_help}}
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{|  id="H46aa480a80641"  class=" tableEdit GO_table_product dataTable"   
{|  id="H46aa480a80641"  class=" tableEdit GO_table_product dataTable"   
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|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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****************************************************************************************** -->{{Product_interactions_help}}
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{|  id="Y46aa480af2b9f"  class=" tableEdit Product_interactions_table"   
{|  id="Y46aa480af2b9f"  class=" tableEdit Product_interactions_table dataTable"   
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|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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{|  id="A46a7d9c8bfa82"  class=" tableEdit Product_localization_table"   
{|  id="A46a7d9c8bfa82"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G6452-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G6452-MONOMER at EcoCyc]  
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VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD</pre>  
VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD</pre>  
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!align=left |Length
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276
276
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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31.072 kDa
31.072 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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7.8 (calculated)
7.8 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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56,380 - 56,505 (calc based on 12 Y, 7 W, and 1 C residues)
56,380 - 56,505 (calc based on 12 Y, 7 W, and 1 C residues)
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****************************************************************************************** -->{{Product_domains_motifs_help}}
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{|  id="E46aa480d1e0c5"  class=" tableEdit Product_motif_table"   
{|  id="E46aa480d1e0c5"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21552.E46aa480d1e0c5&page=21552&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
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!align=left |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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{|  id="G46aa480db748b"  class=" tableEdit Product_resource_table"   
{|  id="G46aa480db748b"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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{|  id="T46aa480e0f293"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:21, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AmiD

Synonyms

predicted amidase and lipoprotein[1], YbjR[2][1], B0867[2][1]

Product description

predicted amidase and lipoprotein[2][3]

EC number (for enzymes)
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki. See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc [4]

complete

GO:0019867

outer membrane

PMID:17526703[5]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [4]

complete

GO:0009253

peptidoglycan catabolic process

GO_REF:0000002
PMID:17526703[5]

IDA: Inferred from Direct Assay

InterPro:IPR002502

P

Seeded from EcoCyc [4]

complete

GO:0009279

cell outer membrane

GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0998
SP_SL:SL-0040

C

Seeded from EcoCyc [4]

complete

GO:0009392

N-acetyl-anhydromuramoyl-L-alanine amidase activity

PMID:17526703[5]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc [4]

complete

GO:0016020

membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc [4]

complete

GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc [4]

complete

GO:0046872

metal ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc [4]

complete

GO:0007047

cell wall organization

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0961

P

Seeded from EcoCyc [4]

complete

GO:0008745

N-acetylmuramoyl-L-alanine amidase activity

PMID:17526703[5]

IDA: Inferred from Direct Assay

F

complete

GO:0019867

outer membrane

PMID:17526703[5]

IDA: Inferred from Direct Assay

C

complete

GO:0008270

zinc ion binding

PMID:17526703[5]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MRRFFWLVAA ALLLAGCAGE KGIVEKEGYQ LDTRRQAQAA YPRIKVLVIH YTADDFDSSL
ATLTDKQVSS HYLVPAVPPR YNGKPRIWQL VPEQELAWHA GISAWRGATR LNDTSIGIEL
ENRGWQKSAG VKYFAPFEPA QIQALIPLAK DIIARYHIKP ENVVAHADIA PQRKDDPGPL
FPWQQLAQQG IGAWPDAQRV NFYLAGRAPH TPVDTASLLE LLARYGYDVK PDMTPREQRR
VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD
Length

276

Mol. Wt

31.072 kDa

pI

7.8 (calculated)

Extinction coefficient

56,380 - 56,505 (calc based on 12 Y, 7 W, and 1 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=amiD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6452-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P75820

UniProt (EcoliWiki Page)

UniProt:P75820

PFAM (EcoliWiki Page)

PFAM:PF01510

RefSeq (EcoliWiki Page)

RefSeq:NP_415388


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Uehara, T & Park, JT (2007) An anhydro-N-acetylmuramyl-L-alanine amidase with broad specificity tethered to the outer membrane of Escherichia coli. J. Bacteriol. 189 5634-41 PubMed

Categories

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