insD-6:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''insD-6''  
''insD-6''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''insD, ECK0358, b0361, JW0352, yi22-1, b1402, JW1397, yi22-2, b1996, JW1975, yi22-3, b2860, JW2826, yi22-4, b3045, JW3013, yi22-5, b4273, JW4230, yi22-6, unique to W3110, JW5933, JW5918, JW5903, JW5899, ECK1572, b1578, JW1570, insD-1, insD-2, insD-3, insD-4, insD-5''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''insD, ECK0358, b0361, JW0352, yi22-1, b1402, JW1397, yi22-2, b1996, JW1975, yi22-3, b2860, JW2826, yi22-4, b3045, JW3013, yi22-5, b4273, JW4230, yi22-6, unique to W3110, JW5933, JW5918, JW5903, JW5899, ECK1572, b1578, JW1570, insD-1, insD-2, insD-3, insD-4, insD-5''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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IS2 element protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>, Qin prophage; predicted transposase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
IS2 element protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>, Qin prophage; predicted transposase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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InsD-2, IS2 insertion element transposase InsAB'<ref name='LIB:Riley_2006'/>, CP4-44 prophage; IS2 insertion element transposase InsAB'<ref name='LIB:Riley_2006'/>, KpLE2 phage-like element; IS2 insertion element transposase InsAB'<ref name='LIB:Riley_2006'/>, IS2 element protein<ref name='LIB:Riley_2006'/>, Qin prophage; predicted transposase<ref name='LIB:Riley_2006'/>, B3045<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0361<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1402<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1996<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2860<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B4273<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1578<ref name='LIB:EcoCyc10.6'/>, InsD-1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsD-3<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsD-4<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsD-5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsD-6<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
InsD-2, IS2 insertion element transposase InsAB'<ref name='LIB:Riley_2006'/>, CP4-44 prophage; IS2 insertion element transposase InsAB'<ref name='LIB:Riley_2006'/>, KpLE2 phage-like element; IS2 insertion element transposase InsAB'<ref name='LIB:Riley_2006'/>, IS2 element protein<ref name='LIB:Riley_2006'/>, Qin prophage; predicted transposase<ref name='LIB:Riley_2006'/>, B3045<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0361<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1402<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1996<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2860<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B4273<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1578<ref name='LIB:EcoCyc10.6'/>, InsD-1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsD-3<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsD-4<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsD-5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, InsD-6<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:insCD-1|insCD-1]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:insCD-2|insCD-2]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:insCD-3|insCD-3]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:ygeM|ygeM]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:insCD-5|insCD-5]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:insCD-6|insCD-6]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:dicB-ydfDE-insD-intD|dicB-ydfDE-insD-intD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:insCD-1|insCD-1]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:insCD-2|insCD-2]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:insCD-3|insCD-3]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:ygeM|ygeM]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:insCD-5|insCD-5]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:insCD-6|insCD-6]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:dicB-ydfDE-insD-intD|dicB-ydfDE-insD-intD]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=insD-6&loc=MG1655:380898..381803,W3110:380898..381803,MG1655:1466850..1465945,W3110:1470540..1469635,MG1655:2067881..2066976,W3110:2071994..2071089,MG1655:2995299..2994394,W3110:2995933..2995028,MG1655:3184532..3185437,W3110:3185166..3186071,MG1655:4496618..4497523,W3110:4503275..4504180,W3110:3743867..3742944,W3110:2321728..2320805,W3110:1301435..1302358,W3110:1106556..1105633,MG1655:1648905..1649561,W3110:1652595..1653251,DH10B:4598426..4599331,REL606:2005753..2006658 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2005753&end=2006658&gene=insD-6&aa=mdsaraliargwgvslvsrclrvsraqlhvilrrtddwmdgrrsrhtddtdvllrihhvigelptygyrrvwallrrqaeldgmpainakrvyrimrqnalllerkpavppskrahtgrvavkesnqrwcsdgfefccdngerlrvtfaldccdrealhwavttggfnsetvqdvmlgaverrfgndlpsspvewltdngscyranetrqfarmlglepkntavrspesngiaesfvktikrdyisimpkpdgltaaknlaeafehynewhphsalgyrspreylrqracnglsdnrclei Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=insD-6+AND+escherichia+coli Pubmed(insD-6)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=insD-6 Textpresso(insD-6)]


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Revision as of 00:33, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

insD-6

Gene Synonym(s)

insD, ECK0358, b0361, JW0352, yi22-1, b1402, JW1397, yi22-2, b1996, JW1975, yi22-3, b2860, JW2826, yi22-4, b3045, JW3013, yi22-5, b4273, JW4230, yi22-6, unique to W3110, JW5933, JW5918, JW5903, JW5899, ECK1572, b1578, JW1570, insD-1, insD-2, insD-3, insD-4, insD-5[1][2][3]

Product Desc.

IS2 element protein[3][2], Qin prophage; predicted transposase[3][2]


Product Synonyms(s)

InsD-2, IS2 insertion element transposase InsAB'[1], CP4-44 prophage; IS2 insertion element transposase InsAB'[1], KpLE2 phage-like element; IS2 insertion element transposase InsAB'[1], IS2 element protein[1], Qin prophage; predicted transposase[1], B3045[3][1], B0361[3][1], B1402[3][1], B1996[3][1], B2860[3][1], B4273[3][1], B1578[3], InsD-1[3][1], InsD-3[3][1], InsD-4[3][1], InsD-5[3][1], InsD-6[3][1]

Function from GO

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): insCD-1[3], insCD-2[3], insCD-3[3], ygeM[3], insCD-5[3], insCD-6[3], dicB-ydfDE-insD-intD[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(insD-6)    Textpresso(insD-6)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 3.13 3.14 3.15 3.16 3.17 3.18 3.19 3.20 3.21 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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