yjbH:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''yjbH'' | ''yjbH'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4021, b4029, JW3989''<ref name='LIB:Riley_2006'/> | ''ECK4021, b4029, JW3989''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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conserved protein, putative lipoprotein and/or outer membrane porin<ref name='LIB:EcoCyc10.6'/>; predicted porin<ref name='LIB:EcoCyc11.1'/> | conserved protein, putative lipoprotein and/or outer membrane porin<ref name='LIB:EcoCyc10.6'/>; predicted porin<ref name='LIB:EcoCyc11.1'/> | ||
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Extracellular polysaccharide production<ref name='LIB:EcoGene'/> | Extracellular polysaccharide production<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted porin<ref name='LIB:Riley_2006'/>, B4029<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted porin<ref name='LIB:Riley_2006'/>, B4029<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0045226 extracellular polysaccharide biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yjbF|yjbF]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yjbEFGH|yjbEFGH]]<ref name='LIB:EcoCyc11.1'/> | transcription unit(s): [[:Category:Txn_unit:yjbF|yjbF]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yjbEFGH|yjbEFGH]]<ref name='LIB:EcoCyc11.1'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=yjbH&loc=MG1655:4235657..4237753,W3110:4241224..4243320,REL606:4216566..4218662,DH10B:4335353..4337449 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4335353&end=4337449&gene=yjbH&aa=mkkrhllsllalgistacygetypapigpsqsdfggvgllqtptarmaregelslnyrdndqyryysasvqlfpwlettlrytdvrtrqyssveafsgdqtykdkafdlklrlweesywlpqvavgardiggtglfdaeylvaskawgpfdftlglgwgylgtsgnvknplcsasdkycyrdnsykqagsidgsqmfhgpaslfggveyqtpwqplrlkleyegnnyqqdfagkleqkskfnvgaiyrvtdwadvnlsyergntfmfgvtlrtnfndlrpsyndnarpqyqpqpqdailqhsvvanqltllkynagladpqiqakgdtlyvtgeqvkyrdsregiiranrivmndlpdgiktiritenrlnmpqvttetdvaslknhlageplghettlaqkrvepvvpqsteqgwyidksrfdfhidpvlnqsvggpenfymyqlgvmgtadlwltdhllttgslfanlannydkfnytnppqdshlprvrthvreyvqndvyvnnlqanyfqhlgngfygqvyggyletmfggagaevlyrpldsnwafgldanyvkqrdwrsakdmmkftdysvktghltaywtpsfaqdvlvkasvgqylagdkggtleiakrfdsgvvvggyatitnvskeeygegdftkgvyvsvpldlfssgptrsraaigwtpltrdggqqlgrkfqlydmtsdrsvnfr Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjbH+AND+escherichia+coli Pubmed(yjbH)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yjbH Textpresso(yjbH)] | |||
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Revision as of 00:32, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
yjbH |
|---|---|
| Gene Synonym(s) |
ECK4021, b4029, JW3989[1] |
| Product Desc. |
conserved protein, putative lipoprotein and/or outer membrane porin[2]; predicted porin[3] Extracellular polysaccharide production[4] |
| Product Synonyms(s) | |
| Function from GO |
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Overexpression of the yjbEFGH operon alters colony morphology and leads to production of a novel extracellular polysaccharide (Ferrieres, 2007). yjbH and gfcD are paralogs. YjbH has both type II (18 aa) and (somewhat better) type I (21 aa) signal peptide predictions by LipoP. YjbH is not likely to be a lipoprotein because the lipobox Cys is poorly conserved.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.