csrA:Quickview: Difference between revisions
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''csrA'' | ''csrA'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK2691, b2696, JW2666, zfiA''<ref name='LIB:Riley_2006'/> | ''ECK2691, b2696, JW2666, zfiA''<ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
| Line 43: | Line 43: | ||
Global regulator of carbon source metabolism; CsrA exerts reciprocal effects on glycolysis versus gluconeogenesis and glycogen biosynthesis; glgC mRNA-binding activity blocks GlgC translation; csrB RNA inhibits csrA<ref name='LIB:EcoGene'/> | Global regulator of carbon source metabolism; CsrA exerts reciprocal effects on glycolysis versus gluconeogenesis and glycogen biosynthesis; glgC mRNA-binding activity blocks GlgC translation; csrB RNA inhibits csrA<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
pleiotropic regulatory protein for carbon source metabolism<ref name='LIB:Riley_2006'/>, B2696<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ZfiA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | pleiotropic regulatory protein for carbon source metabolism<ref name='LIB:Riley_2006'/>, B2696<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ZfiA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:csrA|csrA]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:csrA|csrA]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=csrA&loc=MG1655:2817168..2816983,W3110:2817802..2817617,DH10B:2909710..2909525,REL606:2714005..2713820 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2714005&end=2713820&gene=csrA&aa=mliltrrvgetlmigdevtvtvlgvkgnqvrigvnapkevsvhreeiyqriqaeksqqssy Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csrA+AND+escherichia+coli Pubmed(csrA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=csrA Textpresso(csrA)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 00:06, 22 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
csrA |
|---|---|
| Gene Synonym(s) |
ECK2691, b2696, JW2666, zfiA[1] |
| Product Desc. |
carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties[2][3]; Component of CsrA complex with CsrB RNA[3] Global regulator of carbon source metabolism; CsrA exerts reciprocal effects on glycolysis versus gluconeogenesis and glycogen biosynthesis; glgC mRNA-binding activity blocks GlgC translation; csrB RNA inhibits csrA[4] |
| Product Synonyms(s) |
pleiotropic regulatory protein for carbon source metabolism[1], B2696[2][1], ZfiA[2][1], CsrA[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Recombinant CsrA-His6 was N-terminally sequenced, but this does not Verify since translation start was forced at ATG: Met is not clipped: MLIL start. CsrA also postively regulates FlhCD post-translationally, and hence is required for motility.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.