dadX:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''dadX''  
''dadX''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1178, b1190, JW1179, alnA, alnB, dadB, msuA?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK1178, b1190, JW1179, alnA, alnB, dadB, msuA?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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ALARACECAT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
ALARACECAT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Alanine racemase; homodimeric<ref name='LIB:EcoGene'/>
Alanine racemase; homodimeric<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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alanine racemase 2, PLP-binding<ref name='LIB:Riley_2006'/>, B1190<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DadB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AlnB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AlnA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DadX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, alanine racemase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
alanine racemase 2, PLP-binding<ref name='LIB:Riley_2006'/>, B1190<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DadB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AlnB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AlnA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DadX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, alanine racemase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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ΔdadX fails to grow on L-alanine as sole carbon source. No D-alanine auxotrophy except in the double ΔalrΔdadX mutant. Either Alr or DadX supplies sufficient D-alanine for cell wall biosynthesis.  
ΔdadX fails to grow on L-alanine as sole carbon source. No D-alanine auxotrophy except in the double ΔalrΔdadX mutant. Either Alr or DadX supplies sufficient D-alanine for cell wall biosynthesis.  
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:dadAX|dadAX]]<ref name='LIB:EcoCyc10.6'/>, dad  
transcription unit(s): [[:Category:Txn_unit:dadAX|dadAX]]<ref name='LIB:EcoCyc10.6'/>, dad  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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Induced by L-alanine. Converts L- to D-alanine for catabolism.
Induced by L-alanine. Converts L- to D-alanine for catabolism.
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dadX&loc=MG1655:1238102..1239172,W3110:1240456..1241526,DH10B:1278343..1279413,REL606:1239029..1240099 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1239029&end=1240099&gene=dadX&aa=mtrpiqasldlqalkqnlsivrqaatharvwsvvkanayghgieriwsaigatdgfallnleeaitlrergwkgpilmlegffhaqdleiydqhrlttcvhsnwqlkalqnarlkapldiylkvnsgmnrlgfqpdrvltvwqqlramanvgemtlmshfaeaehpdgisgamarieqaaeglecrrslsnsaatlwhpeahfdwvrpgiilygaspsgqwrdiantglrpvmtlsseiigvqtlkagervgyggrytardeqrigivaagyadgyprhaptgtpvlvdgvrtmtvgtvsmdmlavdltpcpqagigtpvelwgkeikiddvaaaagtvgyelmcalalrvpvvtv Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dadX+AND+escherichia+coli Pubmed(dadX)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dadX Textpresso(dadX)]


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Revision as of 00:04, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

dadX

Gene Synonym(s)

ECK1178, b1190, JW1179, alnA, alnB, dadB, msuA?[1][2]

Product Desc.

ALARACECAT[2][3];

Component of alanine racemase 2, PLP-binding[3]

Alanine racemase; homodimeric[4]

Product Synonyms(s)

alanine racemase 2, PLP-binding[1], B1190[2][1], DadB[2][1], AlnB[2][1], AlnA[2][1], DadX[2][1], alanine racemase[2][1]

Function from GO
Knock-Out Phenotype

ΔdadX fails to grow on L-alanine as sole carbon source. No D-alanine auxotrophy except in the double ΔalrΔdadX mutant. Either Alr or DadX supplies sufficient D-alanine for cell wall biosynthesis.

Regulation/Expression

transcription unit(s): dadAX[2], dad

Regulation/Activity

Induced by L-alanine. Converts L- to D-alanine for catabolism.

Quick Links

DNA display    Protein display    Pubmed(dadX)    Textpresso(dadX)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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